Additional file 9: Fig. S7 . CRX is required to activate Dependent Group C enhancer elements and remodel chromatin. Plots display mean (black line) and SEM (gray bars) of DNase I data presented in Fig. 5a for CRX Dependent (a) and Independent (b) sites. (Two-way ANOVA with Tukey multiple comparison testing; **** p<0.0001) (c) Scatterplot displays changes in H3K27Ac deposition at all peaks (light gray). Black and red denote the subset of H3K27Ac peaks that contain CRX Independent and Dependent Group C sites. (d) Quantification of the fold-change of H3K27Ac deposition in WT vs Crx-/-. (Wilcoxon Rank Sum Test; **** p < 2.2 × 10−16
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
<p><i>Top row:</i> Venn diagrams of FAIRE DNA peaks induced in Hepa-1 cells treated with 25 µM Cr(VI...
Crx is the principal transcription factor of the photoreceptor transcriptional network and is a key ...
Additional file 3: Fig. S2 . Affected regulatory sites show distinct changes in activity over normal...
Additional file 1 . Analysis and quantification of ATAC-seq and ChIP-seq data. Excel sheets report; ...
Additional file 6: Fig. S4 . Distinct group-related genes show different expression values. Boxplots...
Additional file 2: Fig. S1 . ATAC-seq data show strong correlation between replicates and with Dnase...
Additional file 12. De novo motif analysis identifies sequences enriched in different sets of CRX-bo...
Additional file 8: Fig. S6 . Dependent and Independent sites show different chromatin state dynamics...
Additional file 13: Fig. S10 . TF motifs explain nature of Independent site activation in absence of...
Additional file 1: Figure S1. Characterization of CRX+/--ROs. A Representative bright field images o...
Quantification of normal epigenetic marks near genes in groups 1, 2, 3, and 6 distinguishes up- and ...
Abstract Background Recent technological advances have delivered the genome-wide targets of many imp...
Increased Crx expression in mutant lines at P10. a RNA-seq derived raw CPM values for each biologica...
Heatmap showing the Z-scores comparing three biological replicates of genes determined to be enriche...
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
<p><i>Top row:</i> Venn diagrams of FAIRE DNA peaks induced in Hepa-1 cells treated with 25 µM Cr(VI...
Crx is the principal transcription factor of the photoreceptor transcriptional network and is a key ...
Additional file 3: Fig. S2 . Affected regulatory sites show distinct changes in activity over normal...
Additional file 1 . Analysis and quantification of ATAC-seq and ChIP-seq data. Excel sheets report; ...
Additional file 6: Fig. S4 . Distinct group-related genes show different expression values. Boxplots...
Additional file 2: Fig. S1 . ATAC-seq data show strong correlation between replicates and with Dnase...
Additional file 12. De novo motif analysis identifies sequences enriched in different sets of CRX-bo...
Additional file 8: Fig. S6 . Dependent and Independent sites show different chromatin state dynamics...
Additional file 13: Fig. S10 . TF motifs explain nature of Independent site activation in absence of...
Additional file 1: Figure S1. Characterization of CRX+/--ROs. A Representative bright field images o...
Quantification of normal epigenetic marks near genes in groups 1, 2, 3, and 6 distinguishes up- and ...
Abstract Background Recent technological advances have delivered the genome-wide targets of many imp...
Increased Crx expression in mutant lines at P10. a RNA-seq derived raw CPM values for each biologica...
Heatmap showing the Z-scores comparing three biological replicates of genes determined to be enriche...
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
<p><i>Top row:</i> Venn diagrams of FAIRE DNA peaks induced in Hepa-1 cells treated with 25 µM Cr(VI...
Crx is the principal transcription factor of the photoreceptor transcriptional network and is a key ...