Additional file 13: Fig. S10 . TF motifs explain nature of Independent site activation in absence of CRX. a Heatmap shows unsupervised clustering of [−log10] transformed p-values representing the significance of representation of the noted TF motif within the set of sites. (* -****) represent TFs referenced in details in the text. b Quantification of MEF2D ChIP-seq data at Group C enhancer sites displays loss of signal specifically at Dependent sites (red) in the Crx−/−. Independent sites (blue) show no change in signal. Quantifications of CTCF binding over time (c maximum peak intensity over development and d relative to CRX bindings site at P21) display consistent signal at Group D Independent sites
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
textabstractApproximately 98% of mammalian DNA is noncoding, yet we understand relatively little abo...
AbstractBackground: Terminal differentiation of many cell types is controlled and maintained by tiss...
Additional file 9: Fig. S7 . CRX is required to activate Dependent Group C enhancer elements and rem...
Additional file 12. De novo motif analysis identifies sequences enriched in different sets of CRX-bo...
Additional file 3: Fig. S2 . Affected regulatory sites show distinct changes in activity over normal...
Additional file 8: Fig. S6 . Dependent and Independent sites show different chromatin state dynamics...
Additional file 6: Fig. S4 . Distinct group-related genes show different expression values. Boxplots...
Additional file 1 . Analysis and quantification of ATAC-seq and ChIP-seq data. Excel sheets report; ...
Additional file 2: Fig. S1 . ATAC-seq data show strong correlation between replicates and with Dnase...
Abstract Background Recent technological advances have delivered the genome-wide targets of many imp...
Summary: Transcription factors often activate and repress different target genes in the same cell. H...
SummaryTranscription factors often activate and repress different target genes in the same cell. How...
Crx is the principal transcription factor of the photoreceptor transcriptional network and is a key ...
Crx mutants show little change to other non-photoreceptor phototransduction components. Heatmap depi...
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
textabstractApproximately 98% of mammalian DNA is noncoding, yet we understand relatively little abo...
AbstractBackground: Terminal differentiation of many cell types is controlled and maintained by tiss...
Additional file 9: Fig. S7 . CRX is required to activate Dependent Group C enhancer elements and rem...
Additional file 12. De novo motif analysis identifies sequences enriched in different sets of CRX-bo...
Additional file 3: Fig. S2 . Affected regulatory sites show distinct changes in activity over normal...
Additional file 8: Fig. S6 . Dependent and Independent sites show different chromatin state dynamics...
Additional file 6: Fig. S4 . Distinct group-related genes show different expression values. Boxplots...
Additional file 1 . Analysis and quantification of ATAC-seq and ChIP-seq data. Excel sheets report; ...
Additional file 2: Fig. S1 . ATAC-seq data show strong correlation between replicates and with Dnase...
Abstract Background Recent technological advances have delivered the genome-wide targets of many imp...
Summary: Transcription factors often activate and repress different target genes in the same cell. H...
SummaryTranscription factors often activate and repress different target genes in the same cell. How...
Crx is the principal transcription factor of the photoreceptor transcriptional network and is a key ...
Crx mutants show little change to other non-photoreceptor phototransduction components. Heatmap depi...
Crx mutants do not abandon the developmental program, but many genes fail to reach proper expression...
textabstractApproximately 98% of mammalian DNA is noncoding, yet we understand relatively little abo...
AbstractBackground: Terminal differentiation of many cell types is controlled and maintained by tiss...