The present study concerns an efficient spectral analysis of advective-diffusive transport in periodic flows by way of a compact version of the diffusive mapping method. Key to the compact approach is the representation of the scalar evolution by only a small subset of the eigenmodes of the mapping matrix, and capturing the relevant features of the transient towards the homogeneous state. This has been demonstrated for purely advective transport in an earlier study by Gorodetskyi et al. Phys. Fluids 24, (2012). Here this ansatz is extended to advective-diffusive transport and more complex 3D flow fields, motivated primarily by the importance \red{of molecular diffusion in many mixing processes.} The study exposed an even greater potential f...