This paper extends the mapping matrix formalism to include the effects of molecular diffusion in the analysis of mixing processes in chaotic flows. The approach followed is Lagrangian, by considering the stochastic formulation of advection-diffusion processes via the Langevin equation for passive fluid particle motion. In addition, the inclusion of diffusional effects in the mapping matrix formalism permits to frame the spectral properties of mapping matrices in the purely convective limit in a quantitative way. Specifically, the effects of coarse graining can be quantified by means of an effective Péclet number that scales as the second power of the linear lattice size. This simple result is sufficient to predict the scaling exponents char...