Provides the complete list of differentially expressed genes (DEG) resulting from differential expression (DE) analysis of RNAseq data of swine mammary gland tissue harvested in late-pregnancy through farrowing and used for Dynamic Impact Approach (DIA) and Ingenuity Pathway Analysis (IPA) analyses. Moreover, it provides additional discussion points, omitted from the main body of the manuscript. (XLSX 1239Â kb
We used the newly-developed Dynamic Impact Approach (DIA) and gene network analysis to study the sow...
Number and overlap of expressed genes with FPKM > 1 in depleted (protocol variants A and B) and non-...
List of differentially expressed (DE) genes for D2 vs D0. Gene ID, fold change, gene name, biotype, ...
Provides complete list of upstream regulator resulting from Ingenuity Pathway Analysis (IPA) analysi...
Provides an aggregate summary of RNA extraction and quality check for all samples. Mammary tissue wa...
Provides an aggregate summary of RNA sequencing and alignment for all the samples. mRNA libraries we...
Distribution of gene expression level (FPKM) for the depleted and non-depleted RNA samples from non-...
RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...
Additional file 2: Table S2. Summary of reads mapping to RNA regions of the swine genome. Number of ...
Lists of differentially expressed genes comparing pathogen-challenged and non-challenged udder quart...
Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...
Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...
The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb
The expression file of annotated DELs in the dry and lactation periods. (XLSX 224 kb
Comparison of two approaches to identify differentially expressed genes during the transition from l...
We used the newly-developed Dynamic Impact Approach (DIA) and gene network analysis to study the sow...
Number and overlap of expressed genes with FPKM > 1 in depleted (protocol variants A and B) and non-...
List of differentially expressed (DE) genes for D2 vs D0. Gene ID, fold change, gene name, biotype, ...
Provides complete list of upstream regulator resulting from Ingenuity Pathway Analysis (IPA) analysi...
Provides an aggregate summary of RNA extraction and quality check for all samples. Mammary tissue wa...
Provides an aggregate summary of RNA sequencing and alignment for all the samples. mRNA libraries we...
Distribution of gene expression level (FPKM) for the depleted and non-depleted RNA samples from non-...
RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...
Additional file 2: Table S2. Summary of reads mapping to RNA regions of the swine genome. Number of ...
Lists of differentially expressed genes comparing pathogen-challenged and non-challenged udder quart...
Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...
Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...
The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb
The expression file of annotated DELs in the dry and lactation periods. (XLSX 224 kb
Comparison of two approaches to identify differentially expressed genes during the transition from l...
We used the newly-developed Dynamic Impact Approach (DIA) and gene network analysis to study the sow...
Number and overlap of expressed genes with FPKM > 1 in depleted (protocol variants A and B) and non-...
List of differentially expressed (DE) genes for D2 vs D0. Gene ID, fold change, gene name, biotype, ...