Additional file 4: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Additional file 5: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of annotated lncRNAs in the dry and lactation periods. (XLSX 1732 kb

Additional file 7: Table S4. of Detection and comparison of microRNAs in the caprine mammary gland tissues of colostrum and common milk stages

Jinxing Hou (771646)
Xiaopeng An (725985)
Yuxuan Song (725984)
Binyun Cao (771649)
Heping Yang (1932919)
Zhou Zhang (197948)
Wenzheng Shen (3994586)
Yunpu Li (3994589)

May 2017

Information of primers for reverse transcription and stem-loop qRT-PCR. (DOCX 15 kb

Additional file 3: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of novel lncRNAs in the dry and lactation periods. (XLSX 980 kb

Additional file 3: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Distribution of gene expression level (FPKM) for the depleted and non-depleted RNA samples from non-...

Additional file 5: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane Günther (3582014)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa Kühn (790106)

May 2019

Lists of differentially expressed genes comparing pathogen-challenged and non-challenged udder quart...

Additional file 2: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...

Additional file 6: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...

Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Brodhagen, Johanna
Weikard, Rosemarie
Thom, Ulrike
Heimes, Annika
Günther, Juliane
Hadlich, Frieder
Zerbe, Holm
Petzl, Wolfgang
Meyerholz, Marie M.
Hoedemaker, Martina
Schuberth, Hans-Joachim
Engelmann, Susanne
Kuehn, Christa

January 2019

BACKGROUND: In the mammary gland transcriptome of lactating dairy cows genes encoding milk proteins ...

Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue.

Brodhagen, Johanna
Weikard, Rosemarie
Thom, Ulrike
Heimes, Annika
Günther, Juliane
Hadlich, Frieder
Zerbe, Holm
Petzl, Wolfgang
Meyerholz, Marie M
Hoedemaker, Martina
Schuberth, Hans-Joachim
Engelmann, Susanne
Kühn, Christa

May 2019

Background: In the mammary gland transcriptome of lactating dairy cows genes encoding milk proteins ...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 7: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of annotated DELs in the dry and lactation periods. (XLSX 224 kb

Additional file 4: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...

Additional file 3: of Transcriptional profiling of swine mammary gland during the transition from colostrogenesis to lactogenesis using RNA sequencing

V. Palombo (5173949)
J. Loor (3441557)
M. DâAndrea (5173958)
M. Vailati-Riboni (3441542)
K. Shahzad (3753895)
U. Krogh (5173952)
P. Theil (5173946)

May 2018

Provides the complete list of differentially expressed genes (DEG) resulting from differential expre...

Additional file 9: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

A) List of 219 Genes Encoding Proteins Differentially Expressed (DE) in Milk Exosomes and Predicted ...

Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 5: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of annotated lncRNAs in the dry and lactation periods. (XLSX 1732 kb

Additional file 7: Table S4. of Detection and comparison of microRNAs in the caprine mammary gland tissues of colostrum and common milk stages

Jinxing Hou (771646)
Xiaopeng An (725985)
Yuxuan Song (725984)
Binyun Cao (771649)
Heping Yang (1932919)
Zhou Zhang (197948)
Wenzheng Shen (3994586)
Yunpu Li (3994589)

May 2017

Information of primers for reverse transcription and stem-loop qRT-PCR. (DOCX 15 kb

Additional file 3: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of novel lncRNAs in the dry and lactation periods. (XLSX 980 kb

Additional file 3: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Distribution of gene expression level (FPKM) for the depleted and non-depleted RNA samples from non-...

Additional file 5: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane Günther (3582014)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa Kühn (790106)

May 2019

Lists of differentially expressed genes comparing pathogen-challenged and non-challenged udder quart...

Additional file 2: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...

Additional file 6: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Johanna Brodhagen (6727115)
Rosemarie Weikard (82446)
Ulrike Thom (6727118)
Annika Heimes (6727121)
Juliane G체nther (6727139)
Frieder Hadlich (732945)
Holm Zerbe (6727127)
Wolfgang Petzl (6727130)
Marie Meyerholz (6727133)
Martina Hoedemaker (6727136)
Hans-Joachim Schuberth (249616)
Susanne Engelmann (87428)
Christa K체hn (6727142)

May 2019

Lists of IPA canonical pathways significantly enriched for differentially expressed genes in non-dep...

Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Brodhagen, Johanna
Weikard, Rosemarie
Thom, Ulrike
Heimes, Annika
Günther, Juliane
Hadlich, Frieder
Zerbe, Holm
Petzl, Wolfgang
Meyerholz, Marie M.
Hoedemaker, Martina
Schuberth, Hans-Joachim
Engelmann, Susanne
Kuehn, Christa

January 2019

BACKGROUND: In the mammary gland transcriptome of lactating dairy cows genes encoding milk proteins ...

Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue.

Brodhagen, Johanna
Weikard, Rosemarie
Thom, Ulrike
Heimes, Annika
Günther, Juliane
Hadlich, Frieder
Zerbe, Holm
Petzl, Wolfgang
Meyerholz, Marie M
Hoedemaker, Martina
Schuberth, Hans-Joachim
Engelmann, Susanne
Kühn, Christa

May 2019

Background: In the mammary gland transcriptome of lactating dairy cows genes encoding milk proteins ...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 7: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of annotated DELs in the dry and lactation periods. (XLSX 224 kb

Additional file 4: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...

Additional file 3: of Transcriptional profiling of swine mammary gland during the transition from colostrogenesis to lactogenesis using RNA sequencing

V. Palombo (5173949)
J. Loor (3441557)
M. DâAndrea (5173958)
M. Vailati-Riboni (3441542)
K. Shahzad (3753895)
U. Krogh (5173952)
P. Theil (5173946)

May 2018

Provides the complete list of differentially expressed genes (DEG) resulting from differential expre...

Additional file 9: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Jiajie Sun (108078)
Kshama Aswath (3480953)
Steven Schroeder (77597)
John Lippolis (752810)
Timothy Reinhardt (3480950)
Tad Sonstegard (392288)

October 2015

A) List of 219 Genes Encoding Proteins Differentially Expressed (DE) in Milk Exosomes and Predicted ...

Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

Ewa Kosciuczuk (4092076)
PaweĹ Lisowski (4092079)
Justyna Jarczak (4092082)
Alicja Majewska (505815)
Magdalena Rzewuska (714471)
Lech Zwierzchowski (3110298)
Emilia Bagnicka (4032857)

June 2017

Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...

Additional file 5: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of annotated lncRNAs in the dry and lactation periods. (XLSX 1732 kb

Additional file 7: Table S4. of Detection and comparison of microRNAs in the caprine mammary gland tissues of colostrum and common milk stages

Jinxing Hou (771646)
Xiaopeng An (725985)
Yuxuan Song (725984)
Binyun Cao (771649)
Heping Yang (1932919)
Zhou Zhang (197948)
Wenzheng Shen (3994586)
Yunpu Li (3994589)

May 2017

Information of primers for reverse transcription and stem-loop qRT-PCR. (DOCX 15 kb

Additional file 3: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression profile of novel lncRNAs in the dry and lactation periods. (XLSX 980 kb

Additional file 4: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Abstract

Extracted data

Additional file 4: of Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Abstract

Extracted data

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