Archive containing relevant output files from the Spine and AGEnt analyses of the reference genomes. (ZIP 4849Â kb
Table S5. A list of the 19 gene expression datasets which have more samples than 50 (complementary l...
Example of a summary report from the comparative analysis of 40 E. coli genomes as listed in Table ...
Table S3. Statistics regarding NGS output and bioinformatic pipeline used for assembling isolate gen...
Archive containing output files from ClustAGE analysis of accessory genome sequence files found in A...
Comparison of ClustAGE results with pairwise gene ortholog analysis. (XLSX 54Â kb
Abstract Background The non-conserved accessory genome of bacteria can be associated with important ...
Table of phages and large terminase proteins used in Phamerator database. (XLSX 15Â kb
Table S1. Assembly statistics and taxonomy for each genome sequenced. (XLSX 18Â kb
List of 949 decoded bacterial genomes present in the KEGG web platform deemed as pathogenic along wi...
Summary of TCGA data by bacterial read pair. This file is a tab-delimited text file of all TCGA read...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Bacterial strain orthology logic array indicating the presence of given orthologs (7194 of them) in ...
List of the 803 archaeal genomes and the 2078 bacterial genomes we used in our comparative analysis....
Commands used for the analyses in this study. Note that the original file paths have been retained h...
List of primers used in this study. A list of a forward and reverse primers used in this study for v...
Table S5. A list of the 19 gene expression datasets which have more samples than 50 (complementary l...
Example of a summary report from the comparative analysis of 40 E. coli genomes as listed in Table ...
Table S3. Statistics regarding NGS output and bioinformatic pipeline used for assembling isolate gen...
Archive containing output files from ClustAGE analysis of accessory genome sequence files found in A...
Comparison of ClustAGE results with pairwise gene ortholog analysis. (XLSX 54Â kb
Abstract Background The non-conserved accessory genome of bacteria can be associated with important ...
Table of phages and large terminase proteins used in Phamerator database. (XLSX 15Â kb
Table S1. Assembly statistics and taxonomy for each genome sequenced. (XLSX 18Â kb
List of 949 decoded bacterial genomes present in the KEGG web platform deemed as pathogenic along wi...
Summary of TCGA data by bacterial read pair. This file is a tab-delimited text file of all TCGA read...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Bacterial strain orthology logic array indicating the presence of given orthologs (7194 of them) in ...
List of the 803 archaeal genomes and the 2078 bacterial genomes we used in our comparative analysis....
Commands used for the analyses in this study. Note that the original file paths have been retained h...
List of primers used in this study. A list of a forward and reverse primers used in this study for v...
Table S5. A list of the 19 gene expression datasets which have more samples than 50 (complementary l...
Example of a summary report from the comparative analysis of 40 E. coli genomes as listed in Table ...
Table S3. Statistics regarding NGS output and bioinformatic pipeline used for assembling isolate gen...
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