Additional file 1: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Additional file 4: of Pathogenic functions of host microbiota

Silke Rath (4027913)
Tatjana Rud (5802725)
André Karch (502952)
Dietmar Pieper (3502784)
Marius Vital (559569)

September 2018

The number of genomes of major genera exhibiting individual pathofunctions is displayed, where the p...

Additional file 1: of Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains

Vikas Ghattargi (5719133)
Meghana Gaikwad (5719136)
Bharati Meti (5719139)
Yogesh Nimonkar (5719142)
Kunal Dixit (5719145)
Om Prakash (574179)
Yogesh Shouche (778100)
Shrikant Pawar (3462947)
Dhiraj Dhotre (5719148)

September 2018

Figure S1 Features assigned to subsystems from RAST present in all ten Enterococcus strains. Figure ...

Additional file 1: Table S1. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu (3567590)
Huajun Zheng (38118)
Minjun Yang (120481)
Zhuofei Xu (38107)
Xiangru Wang (3196767)
Liuya Wei (3567596)
Biao Tang (3567593)
Feng Liu (72874)
Yanyan Zhang (1462111)
Yi Ding (172783)
Xibiao Tang (3567599)
Bin Wu (138543)
Timothy Johnson (139876)
Huanchun Chen (38125)
Chen Tan (651657)

September 2015

Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb

Additional file 2: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago Ontañón (3437705)
Aydin Tozeren (84457)

October 2015

List of 1578 decoded bacterial genomes present in the KEGG web platform with no present citation imp...

Additional file 3: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago Ontañón (3437705)
Aydin Tozeren (84457)

October 2015

Bacterial strain orthology logic array indicating the presence of given orthologs (7194 of them) in ...

Additional file 5: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity â a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago OntaĂąĂłn (3437828)
Aydin Tozeren (84457)

October 2015

Pathogen- and nonpathogen gene circuits identified via within genera comparisons. The genera exhibit...

Additional file 1: of Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

Chandan Pal (3455990)
Johan Bengtsson-Palme (3455993)
Erik Kristiansson (75825)
D. Larsson (3455996)

November 2015

Additional data file 1 contains additional tables and figures. Table S1. Metadata of 2522 completely...

RESEARCH ARTICLE Open Access Encyclopedia

August 2016

of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale sy...

Additional file 2: Table S1. of A widespread family of polymorphic toxins encoded by temperate phages

Anne Jamet (682331)
Marie Touchon (118515)
Bruno Ribeiro-Gonçalves (2519671)
João Carriço (1963)
Alain Charbit (148820)
Xavier Nassif (191705)
Mario Ramirez (2742985)
Eduardo Rocha (801948)

August 2017

General characteristics of bacteriophages, results of the prediction of lifestyle, and of the detect...

Additional file 4: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

Raphaël Méheust (3140388)
Andrew Watson (263687)
François-Joseph Lapointe (2824688)
R. Papke (5350721)
Philippe Lopez (685621)
Eric Bapteste (11617)

June 2018

List of the 803 archaeal genomes and the 2078 bacterial genomes we used in our comparative analysis....

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 4: of Pathogenic functions of host microbiota

Silke Rath (4027913)
Tatjana Rud (5802725)
André Karch (502952)
Dietmar Pieper (3502784)
Marius Vital (559569)

September 2018

The number of genomes of major genera exhibiting individual pathofunctions is displayed, where the p...

Additional file 1: of Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains

Vikas Ghattargi (5719133)
Meghana Gaikwad (5719136)
Bharati Meti (5719139)
Yogesh Nimonkar (5719142)
Kunal Dixit (5719145)
Om Prakash (574179)
Yogesh Shouche (778100)
Shrikant Pawar (3462947)
Dhiraj Dhotre (5719148)

September 2018

Figure S1 Features assigned to subsystems from RAST present in all ten Enterococcus strains. Figure ...

Additional file 1: Table S1. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu (3567590)
Huajun Zheng (38118)
Minjun Yang (120481)
Zhuofei Xu (38107)
Xiangru Wang (3196767)
Liuya Wei (3567596)
Biao Tang (3567593)
Feng Liu (72874)
Yanyan Zhang (1462111)
Yi Ding (172783)
Xibiao Tang (3567599)
Bin Wu (138543)
Timothy Johnson (139876)
Huanchun Chen (38125)
Chen Tan (651657)

September 2015

Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb

Additional file 2: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago Ontañón (3437705)
Aydin Tozeren (84457)

October 2015

List of 1578 decoded bacterial genomes present in the KEGG web platform with no present citation imp...

Additional file 3: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago Ontañón (3437705)
Aydin Tozeren (84457)

October 2015

Bacterial strain orthology logic array indicating the presence of given orthologs (7194 of them) in ...

Additional file 5: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity â a large-scale system analysis of decoded bacterial genomes

Maksim Shestov (3437702)
Santiago OntaĂąĂłn (3437828)
Aydin Tozeren (84457)

October 2015

Pathogen- and nonpathogen gene circuits identified via within genera comparisons. The genera exhibit...

Additional file 1: of Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

Chandan Pal (3455990)
Johan Bengtsson-Palme (3455993)
Erik Kristiansson (75825)
D. Larsson (3455996)

November 2015

Additional data file 1 contains additional tables and figures. Table S1. Metadata of 2522 completely...

RESEARCH ARTICLE Open Access Encyclopedia

August 2016

of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale sy...

Additional file 2: Table S1. of A widespread family of polymorphic toxins encoded by temperate phages

Anne Jamet (682331)
Marie Touchon (118515)
Bruno Ribeiro-Gonçalves (2519671)
João Carriço (1963)
Alain Charbit (148820)
Xavier Nassif (191705)
Mario Ramirez (2742985)
Eduardo Rocha (801948)

August 2017

General characteristics of bacteriophages, results of the prediction of lifestyle, and of the detect...

Additional file 4: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

Raphaël Méheust (3140388)
Andrew Watson (263687)
François-Joseph Lapointe (2824688)
R. Papke (5350721)
Philippe Lopez (685621)
Eric Bapteste (11617)

June 2018

List of the 803 archaeal genomes and the 2078 bacterial genomes we used in our comparative analysis....

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 4: of Pathogenic functions of host microbiota

Silke Rath (4027913)
Tatjana Rud (5802725)
André Karch (502952)
Dietmar Pieper (3502784)
Marius Vital (559569)

September 2018

The number of genomes of major genera exhibiting individual pathofunctions is displayed, where the p...

Additional file 1: of Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains

Vikas Ghattargi (5719133)
Meghana Gaikwad (5719136)
Bharati Meti (5719139)
Yogesh Nimonkar (5719142)
Kunal Dixit (5719145)
Om Prakash (574179)
Yogesh Shouche (778100)
Shrikant Pawar (3462947)
Dhiraj Dhotre (5719148)

September 2018

Figure S1 Features assigned to subsystems from RAST present in all ten Enterococcus strains. Figure ...

Additional file 1: Table S1. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu (3567590)
Huajun Zheng (38118)
Minjun Yang (120481)
Zhuofei Xu (38107)
Xiangru Wang (3196767)
Liuya Wei (3567596)
Biao Tang (3567593)
Feng Liu (72874)
Yanyan Zhang (1462111)
Yi Ding (172783)
Xibiao Tang (3567599)
Bin Wu (138543)
Timothy Johnson (139876)
Huanchun Chen (38125)
Chen Tan (651657)

September 2015

Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb

Additional file 1: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Abstract

Extracted data

Additional file 1: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

Abstract

Extracted data

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