Figure S7. An example of FOXA1 deletion detected by RNA-seq but missed by WES due to low coverage in DNA sequencing. (PDF 56Â kb
Details of the fox samples and sequences used in the study. Individuals 1, 2 and 4 were used for tra...
Performance comparison for indel detection from short tandem repeat region of the NA12878 sample. Re...
Unique counts from Choi et al. [35]. Counts of reads from Choi et al. that map uniquely to genes usi...
Figure S4. Examples of detected 214 bp deletion in 3’UTR of ATAD5 and 30 bp insertion in exon 15 of ...
Figure S6. Sequencing coverage comparison of detected WES and RNA-seq indels in SU2C cohort. (PDF 97...
Figure S2. Benchmarking of transIndel for mid-sized indels against existing indel detection tools us...
Figure S5. RNA-seq coverage for annotated exons and introns in subject 1,115,156 from SU2C cohort. (...
Figure S3. TransIndel detects a 3433Â bp deletion in AR from human prostate cancer sample. (PDF 330Â...
Figures S1-S14. Complex indels detected in samples 1â14 and orthogonal validation. (PDF 1637 kb
Figure S2. Indel spectrum determined by TIDE of the on-target sites compared with indel frequencies ...
Abstract Background Insertions and deletions (indels) are a major class of genomic variation associa...
Figure S3. Indel spectrum determined by TIDE of the off-target sites compared with indel frequencies...
Putative complex indels curated from GIAB high-confidence variant calls (n = 160). Table S2. Closely...
Table S1. Parameter Settings used for alignment, data pre-processing and variant calling. Table S2. ...
Polymorphic indel markers (3 bp). The indel markers had PIC values ≥ 0.5, and major allele differenc...
Details of the fox samples and sequences used in the study. Individuals 1, 2 and 4 were used for tra...
Performance comparison for indel detection from short tandem repeat region of the NA12878 sample. Re...
Unique counts from Choi et al. [35]. Counts of reads from Choi et al. that map uniquely to genes usi...
Figure S4. Examples of detected 214 bp deletion in 3’UTR of ATAD5 and 30 bp insertion in exon 15 of ...
Figure S6. Sequencing coverage comparison of detected WES and RNA-seq indels in SU2C cohort. (PDF 97...
Figure S2. Benchmarking of transIndel for mid-sized indels against existing indel detection tools us...
Figure S5. RNA-seq coverage for annotated exons and introns in subject 1,115,156 from SU2C cohort. (...
Figure S3. TransIndel detects a 3433Â bp deletion in AR from human prostate cancer sample. (PDF 330Â...
Figures S1-S14. Complex indels detected in samples 1â14 and orthogonal validation. (PDF 1637 kb
Figure S2. Indel spectrum determined by TIDE of the on-target sites compared with indel frequencies ...
Abstract Background Insertions and deletions (indels) are a major class of genomic variation associa...
Figure S3. Indel spectrum determined by TIDE of the off-target sites compared with indel frequencies...
Putative complex indels curated from GIAB high-confidence variant calls (n = 160). Table S2. Closely...
Table S1. Parameter Settings used for alignment, data pre-processing and variant calling. Table S2. ...
Polymorphic indel markers (3 bp). The indel markers had PIC values ≥ 0.5, and major allele differenc...
Details of the fox samples and sequences used in the study. Individuals 1, 2 and 4 were used for tra...
Performance comparison for indel detection from short tandem repeat region of the NA12878 sample. Re...
Unique counts from Choi et al. [35]. Counts of reads from Choi et al. that map uniquely to genes usi...
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