Unique counts from Choi et al. [35]. Counts of reads from Choi et al. that map uniquely to genes using STAR and HTSeq. Can be downloaded from [43]. (XLSX 5833 kb
Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...
Results of differential expression analysis on RNA-seq data. Features are defined in the GTF file in...
Additional text, tables (Tables S1âS6), and figures (Figures S1âS11) supporting the main analyse...
Counts of multi-map groups (MMGs) from Choi et al. [35]. Counts of reads from Choi et al. that map u...
Counts and FPKM for simulated data from 958 problematic genes. FPKM and read counts calculated by 12...
EdgeR results from unique counts. Differential expression results calculated by edgeR for gene count...
Novel differentially expressed MMGs. The 672 differentially expressed MMGs that do not contain any g...
General characteristics of second problematic group. Boxplots comparing the length of the shortest e...
Read mapping details. This file provides the mapping statistics for all the samples in both RRBS and...
Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, t...
First 1 000 most depleted genes for CHP-212 cell lines. This table shows the list of 1 000 most depl...
Comparison of log fold changes in 50 differentially expressed genes that overlap Huan et al. 2016. A...
Differential expression analysis of protein-coding genes. (a) Comparison of measured fold-changes be...
Comparing fold change estimated from RNA-seq data to predetermined fold change (red dashed line). A ...
Table S1. List of diseases with a significant overlap between genes differentially expressed and gen...
Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...
Results of differential expression analysis on RNA-seq data. Features are defined in the GTF file in...
Additional text, tables (Tables S1âS6), and figures (Figures S1âS11) supporting the main analyse...
Counts of multi-map groups (MMGs) from Choi et al. [35]. Counts of reads from Choi et al. that map u...
Counts and FPKM for simulated data from 958 problematic genes. FPKM and read counts calculated by 12...
EdgeR results from unique counts. Differential expression results calculated by edgeR for gene count...
Novel differentially expressed MMGs. The 672 differentially expressed MMGs that do not contain any g...
General characteristics of second problematic group. Boxplots comparing the length of the shortest e...
Read mapping details. This file provides the mapping statistics for all the samples in both RRBS and...
Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, t...
First 1 000 most depleted genes for CHP-212 cell lines. This table shows the list of 1 000 most depl...
Comparison of log fold changes in 50 differentially expressed genes that overlap Huan et al. 2016. A...
Differential expression analysis of protein-coding genes. (a) Comparison of measured fold-changes be...
Comparing fold change estimated from RNA-seq data to predetermined fold change (red dashed line). A ...
Table S1. List of diseases with a significant overlap between genes differentially expressed and gen...
Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...
Results of differential expression analysis on RNA-seq data. Features are defined in the GTF file in...
Additional text, tables (Tables S1âS6), and figures (Figures S1âS11) supporting the main analyse...
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