Table S6. Number of genes suitable to infer horizontally transferred genes for every combination of donor (columns) and recipient (rows) in both the HPA and butyric acid adaptation experiments. We note that ancestral recipient and donor strains of the same backgrounds may differ in DNA sequence at a small number of nucleotide sites as a result of their strain construction. Thus the number of genes suitable for horizontal gene transfer inference are specific for a donor-recipient combination. ND: not determined. (DOCX 12Â kb
Figure S4. The amounts of B, K and W donors in mixed donor-recipient culture decrease rapidly over t...
Figure S11. Percentage of sequenced clones in which hpa genes appear horizontally transferred. The b...
Table S15. Summary of alignment strategies. The table lists the reference genome(s) we used in whole...
Figure S6. Proportion of sequence reads per gene that map to the donor genome. In our data, we found...
Text S2. Genes transferred to the K recipient from only one but not both donors during evolution on ...
Figure S3. No growth of donors and recipients in media used for experimental evolution. Mean growth ...
Text S3. Potentially adaptive gene transfers from the K donor to the W recipient clones during evolu...
Gene-by-gene analysis of evidence for horizontal gene transfer for all genes in Tables 1 and 2. (DOC...
Figure S13. Putative recombination breakpoints of butyric acid-evolved clones and the distribution o...
Figure S5. Genome-wide sequence coverage of sequenced clones. Histogram of genome-wide sequence cove...
Table S4. Nutrient concentrations tested for cross-feeding experiments. (DOCX 11Â kb
Table S10. Summary of growth parameters of ancestral strains. Growth parameters of the ancestral E. ...
Excel file S1. List of de novo mutations in coding regions found in sequenced clones isolated from H...
Table S11. Summary of growth parameters of populations evolved in HPA. The table shows mean and stan...
Figure S12. Density of cells adapted to butyric acid and total cell density of the evolving replicat...
Figure S4. The amounts of B, K and W donors in mixed donor-recipient culture decrease rapidly over t...
Figure S11. Percentage of sequenced clones in which hpa genes appear horizontally transferred. The b...
Table S15. Summary of alignment strategies. The table lists the reference genome(s) we used in whole...
Figure S6. Proportion of sequence reads per gene that map to the donor genome. In our data, we found...
Text S2. Genes transferred to the K recipient from only one but not both donors during evolution on ...
Figure S3. No growth of donors and recipients in media used for experimental evolution. Mean growth ...
Text S3. Potentially adaptive gene transfers from the K donor to the W recipient clones during evolu...
Gene-by-gene analysis of evidence for horizontal gene transfer for all genes in Tables 1 and 2. (DOC...
Figure S13. Putative recombination breakpoints of butyric acid-evolved clones and the distribution o...
Figure S5. Genome-wide sequence coverage of sequenced clones. Histogram of genome-wide sequence cove...
Table S4. Nutrient concentrations tested for cross-feeding experiments. (DOCX 11Â kb
Table S10. Summary of growth parameters of ancestral strains. Growth parameters of the ancestral E. ...
Excel file S1. List of de novo mutations in coding regions found in sequenced clones isolated from H...
Table S11. Summary of growth parameters of populations evolved in HPA. The table shows mean and stan...
Figure S12. Density of cells adapted to butyric acid and total cell density of the evolving replicat...
Figure S4. The amounts of B, K and W donors in mixed donor-recipient culture decrease rapidly over t...
Figure S11. Percentage of sequenced clones in which hpa genes appear horizontally transferred. The b...
Table S15. Summary of alignment strategies. The table lists the reference genome(s) we used in whole...