<p><b>Note:</b><i>P</i> number of parameters in the <i>ω</i> distribution, <i>K</i> estimated transition/transversion rate ration, <i>ω</i> selection parameter, and <i>p</i><sub>n</sub> proportion of sites that fall into the <i>ω<sub>n</sub></i> site class. <i>p</i>, <i>q</i> shape parameters of the β function (for models M7 and M8). Only positively selected sites with posterior probability >0.95 are shown.</p
<p>Sites marked in bold are positive selected sites that meet the criteria of all applied methods. U...
This figure shows the distribution over sites of the Kullback-Leibler divergence of the experimental...
AbstractPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42372/1/30560294.pd
a<p>Number of parameters.</p>b<p>Only positively selected sites with a posterior probability equal o...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
a<p>Twice the difference between the log likelihood of M0 (one ratio) and two ratio model.</p>b<p><i...
A stringent branch-site codon model was used to detect positive selection in vertebrate evolution. W...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
A stringent branch-site codon model was used to detect positive selection in vertebrate evolution. W...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>The likelihood values and the respective estimated parameters are shown for each model. The ω rat...
Abstract Background Sites of p...
Background: An excess of nonsynonymous substitutions, over neutrality, is considered evidence of po...
Recent genome-wide analyses have revealed patterns of positive selection acting on protein-coding ge...
<p>Sites marked in bold are positive selected sites that meet the criteria of all applied methods. U...
This figure shows the distribution over sites of the Kullback-Leibler divergence of the experimental...
AbstractPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42372/1/30560294.pd
a<p>Number of parameters.</p>b<p>Only positively selected sites with a posterior probability equal o...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
a<p>Twice the difference between the log likelihood of M0 (one ratio) and two ratio model.</p>b<p><i...
A stringent branch-site codon model was used to detect positive selection in vertebrate evolution. W...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
A stringent branch-site codon model was used to detect positive selection in vertebrate evolution. W...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>The likelihood values and the respective estimated parameters are shown for each model. The ω rat...
Abstract Background Sites of p...
Background: An excess of nonsynonymous substitutions, over neutrality, is considered evidence of po...
Recent genome-wide analyses have revealed patterns of positive selection acting on protein-coding ge...
<p>Sites marked in bold are positive selected sites that meet the criteria of all applied methods. U...
This figure shows the distribution over sites of the Kullback-Leibler divergence of the experimental...
AbstractPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42372/1/30560294.pd