<p>(A) Numbers of the genes that are unique to each isolate, specific to two isolates, and common to all three isolates. Predicted genes of P131, Y34, and 70-15 are represented with circles colored in green, blue, and red, respectively. (B) Distance analysis with concatenated amino acid sequences of orthologous proteins that are conserved in P131, Y34, and 70-15. The tree was constructed with the NEIGHBOR program using the distance matrix calculated by PROTDIST from PHYLIP.</p
<p>The upper triangle shows the variable domains, the lower one the conserved domains. Amino acid se...
Identifying differentially expressed genes is critical in microarray data analysis. Many methods hav...
<p>We constructed neighbor-joining trees based on the correlation between expression values (FPKM>1....
<p>(<b>A</b>) Network diagram of all 1,229 sequenced isolates that could be assigned to one of 78 cl...
<p><b>A</b>: Radial phylogenetic tree of 139 isolates based on the concatenated sequences of seven M...
<p>In each figure, red is used for <i>O. rufipogon</i>, blue for <i>indica</i>, and green for <i>jap...
<p>Neighbor-Net analysis of the concatenated nucleotide sequences based on uncorrected p-distance ma...
<p>Twelve representative CCGs are shown in (A) PCA plot where principle component analysis (PCA) of ...
a<p>: calculated using program MEGA 5; the genetic distances listed in the table represent estimates...
<p>The flow chart details the three steps in genome tree construction. In the first step a data matr...
<p>A. In this analysis, the strain N315 was included and used as outgroup. B. Same analysis as in A ...
<p>The Cluster analysis was performed using Hierarchical cluster analysis. Rows represent differenti...
<p>A) Each arrow point towards a particular protein-protein physical/functional interaction predicti...
<p>The trees were constructed by the distance-based neighbor-joining algorithm using MEGA 5.2.2 soft...
Genetic and geographic distance data for analysis of conformance to an isolation by model of gene fl...
<p>The upper triangle shows the variable domains, the lower one the conserved domains. Amino acid se...
Identifying differentially expressed genes is critical in microarray data analysis. Many methods hav...
<p>We constructed neighbor-joining trees based on the correlation between expression values (FPKM>1....
<p>(<b>A</b>) Network diagram of all 1,229 sequenced isolates that could be assigned to one of 78 cl...
<p><b>A</b>: Radial phylogenetic tree of 139 isolates based on the concatenated sequences of seven M...
<p>In each figure, red is used for <i>O. rufipogon</i>, blue for <i>indica</i>, and green for <i>jap...
<p>Neighbor-Net analysis of the concatenated nucleotide sequences based on uncorrected p-distance ma...
<p>Twelve representative CCGs are shown in (A) PCA plot where principle component analysis (PCA) of ...
a<p>: calculated using program MEGA 5; the genetic distances listed in the table represent estimates...
<p>The flow chart details the three steps in genome tree construction. In the first step a data matr...
<p>A. In this analysis, the strain N315 was included and used as outgroup. B. Same analysis as in A ...
<p>The Cluster analysis was performed using Hierarchical cluster analysis. Rows represent differenti...
<p>A) Each arrow point towards a particular protein-protein physical/functional interaction predicti...
<p>The trees were constructed by the distance-based neighbor-joining algorithm using MEGA 5.2.2 soft...
Genetic and geographic distance data for analysis of conformance to an isolation by model of gene fl...
<p>The upper triangle shows the variable domains, the lower one the conserved domains. Amino acid se...
Identifying differentially expressed genes is critical in microarray data analysis. Many methods hav...
<p>We constructed neighbor-joining trees based on the correlation between expression values (FPKM>1....