<p>Three structure snapshots of L33 (a, b, and c) and of P33 (e, f, and d) β3 were chosen among the statistically most frequent structures in terms of rASA and number of contacts. L33 and P33 atoms are shown as blue and red spheres, respectively. All remaining atoms belonging to the PSI, I-EGF-1, and I-EGF-2 domains are shown as orange, light green and dark green spheres, respectively. In these snapshots, L33 is largely exposed at the β3 surface while P33 can be remote. P33 is in relatively close contact with the I-EGF-2 domain, but L33 is not. These representations were generated using PyMOL software <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0047304#pone.0047304-DeLano1" target="_blank">[16]</a>.</p
<p><b>A</b>, Raw synchrotron SAXS data for <i>Pf</i>-Frm1-FH1FH2 (red), <i>Pf</i>-Frm1-FH2 (blue), a...
<p>(A) Structural model of the lowest scoring models from the 4 largest clusters, showing the PP2AA ...
Fig a): The distribution of peptide plane O atom coordinates (ϑ, ψ) in our PDB pool of structures on...
<p>(A) RMSF values calculated for each residue of the L33 (blue line) and the P33 (red line) forms o...
<p><i>N<sub>eq</sub></i> values (average number of PBs weighted by their frequencies, see <a href="h...
<p>Each vertex represents one pocket. Vertices are connected if the pockets are located in similar r...
<p><b>A</b>. The structure of the Ig domain is generated by homologous modeling and grafted to the c...
<p>Arg689 and the location of the α/β cleavage site are highlighted in magenta color. The molecular ...
<p>(A) Left panel: Surface and ribbon representations of symmetry-related RON Sema-PSI molecules. Ri...
<p>Coloured spheres represent the SiteMap predictions for eight top-ranking surface clefts on the wi...
A. Topology of Esp1 (top) and Esp2 (bottom) shown in rainbow coloring, with similar coloring of the ...
<p>Renderings of the five hundred randomized structures used as initial structures in simulations af...
PSI domains are cysteine-rich modules found in extracellular fragments of hundreds of signaling prot...
<p>(A) The alignment of three randomly sampled conformations from Cluster 1 to the holo structure (P...
<p>A) Apo-MDM2. Structural ensemble (A1) and structural details of the closed (A2) and open states (...
<p><b>A</b>, Raw synchrotron SAXS data for <i>Pf</i>-Frm1-FH1FH2 (red), <i>Pf</i>-Frm1-FH2 (blue), a...
<p>(A) Structural model of the lowest scoring models from the 4 largest clusters, showing the PP2AA ...
Fig a): The distribution of peptide plane O atom coordinates (ϑ, ψ) in our PDB pool of structures on...
<p>(A) RMSF values calculated for each residue of the L33 (blue line) and the P33 (red line) forms o...
<p><i>N<sub>eq</sub></i> values (average number of PBs weighted by their frequencies, see <a href="h...
<p>Each vertex represents one pocket. Vertices are connected if the pockets are located in similar r...
<p><b>A</b>. The structure of the Ig domain is generated by homologous modeling and grafted to the c...
<p>Arg689 and the location of the α/β cleavage site are highlighted in magenta color. The molecular ...
<p>(A) Left panel: Surface and ribbon representations of symmetry-related RON Sema-PSI molecules. Ri...
<p>Coloured spheres represent the SiteMap predictions for eight top-ranking surface clefts on the wi...
A. Topology of Esp1 (top) and Esp2 (bottom) shown in rainbow coloring, with similar coloring of the ...
<p>Renderings of the five hundred randomized structures used as initial structures in simulations af...
PSI domains are cysteine-rich modules found in extracellular fragments of hundreds of signaling prot...
<p>(A) The alignment of three randomly sampled conformations from Cluster 1 to the holo structure (P...
<p>A) Apo-MDM2. Structural ensemble (A1) and structural details of the closed (A2) and open states (...
<p><b>A</b>, Raw synchrotron SAXS data for <i>Pf</i>-Frm1-FH1FH2 (red), <i>Pf</i>-Frm1-FH2 (blue), a...
<p>(A) Structural model of the lowest scoring models from the 4 largest clusters, showing the PP2AA ...
Fig a): The distribution of peptide plane O atom coordinates (ϑ, ψ) in our PDB pool of structures on...