<p>a) Average energy profile at 280 K (5 sets of data were used). The average curve is shown in black while the standard deviation is shown in red. The green dot represents the point around which the profiles were centered before computing the statistics over a 10 ns window (5 ns before and 5 ns after); b) Average energy profile at 300 K (5 sets of data were used).</p
<p>(A) RMSD profile of Nbp35-Cfd1 complex for all-atoms (red), backbone atoms (blue) and side chain ...
<p>300 K, 350 K, 400 K and the temperature average (T_Avg) are shown with bars in blue, red, green, ...
Ensemble averaged TAMSD curves for experimental (black) and simulation (orange) alongside the line o...
<p>The potential energy and the RMSD of B16, C2, and C5 hexons in 10-ns MD simulation are shown on r...
<p>(A) CRM1-NES-RanGTP—DDX3 interaction energy, (B) RanGTP—DDX3 energy, (C) RMSD, and (D) BSA are pl...
<p>(a) CCR2 and (b) CCR5 plot shows the variation in potential energy throughout the system for a pe...
<p>The dotted line at shows the estimate for the MD particles from Eq. (13); full symbols are simul...
<p>The trajectories of the backbone root-mean-square deviation (RMSD) of the EcRDBD point mutant str...
<p>Average RMSD, % α-helicity of KLP64D/68D-S after 20 ns MD simulations at different temperatures (...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>Structure snapshots (one structure for 2-ns interval) of the first MD simulations respectively fo...
<p>(A) Backbone RMSD with respect to the starting structure during the entire course of 100 ns MD si...
<p>(A) Plot of root mean square deviation (RMSD) of Cα of TPX2-Aurora A (protein) and TPX2/Aurora A ...
<p>A. Plot of root mean square deviation (RMSD) of model 1L P<sub>core</sub> Cα atoms versus simulat...
Comparison of the simulated energy consumption of the three typical models with the average energy c...
<p>(A) RMSD profile of Nbp35-Cfd1 complex for all-atoms (red), backbone atoms (blue) and side chain ...
<p>300 K, 350 K, 400 K and the temperature average (T_Avg) are shown with bars in blue, red, green, ...
Ensemble averaged TAMSD curves for experimental (black) and simulation (orange) alongside the line o...
<p>The potential energy and the RMSD of B16, C2, and C5 hexons in 10-ns MD simulation are shown on r...
<p>(A) CRM1-NES-RanGTP—DDX3 interaction energy, (B) RanGTP—DDX3 energy, (C) RMSD, and (D) BSA are pl...
<p>(a) CCR2 and (b) CCR5 plot shows the variation in potential energy throughout the system for a pe...
<p>The dotted line at shows the estimate for the MD particles from Eq. (13); full symbols are simul...
<p>The trajectories of the backbone root-mean-square deviation (RMSD) of the EcRDBD point mutant str...
<p>Average RMSD, % α-helicity of KLP64D/68D-S after 20 ns MD simulations at different temperatures (...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>Structure snapshots (one structure for 2-ns interval) of the first MD simulations respectively fo...
<p>(A) Backbone RMSD with respect to the starting structure during the entire course of 100 ns MD si...
<p>(A) Plot of root mean square deviation (RMSD) of Cα of TPX2-Aurora A (protein) and TPX2/Aurora A ...
<p>A. Plot of root mean square deviation (RMSD) of model 1L P<sub>core</sub> Cα atoms versus simulat...
Comparison of the simulated energy consumption of the three typical models with the average energy c...
<p>(A) RMSD profile of Nbp35-Cfd1 complex for all-atoms (red), backbone atoms (blue) and side chain ...
<p>300 K, 350 K, 400 K and the temperature average (T_Avg) are shown with bars in blue, red, green, ...
Ensemble averaged TAMSD curves for experimental (black) and simulation (orange) alongside the line o...