<p>The trajectories of the backbone root-mean-square deviation (RMSD) of the EcRDBD point mutant structures (black lines) in comparison with the EcRDBD<sub>WT</sub> (gray lines, WT) and the UspDBD (gray, thin lines). The RMSDs were calculated for 10 ns MD simulations at 300 K with respect to energy-minimized structures. The thermalisation time up to 300 K is not shown.</p
<p>Comparison of RMSF curves (a), overall RMSD curves (b) and local RMSD curves in mutant regions N3...
<p>Root mean square deviation (RMSD) from the crystallographic structures of the C<sup>α</sup> atoms...
<p>RMSDs were calculated for the main-chain atoms, using the initial, energy minimized structure as ...
<p>The side chain root-mean-square fluctuations (RMSF) of the EcRDBD point mutants and the UspDBD (s...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>(A) Backbone RMSD with respect to the starting structure during the entire course of 100 ns MD si...
<p>(A) Control plots representing the stability of the models during the molecular dynamics run. The...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>The root-mean-square deviations (RMSDs) of MTHase backbone atoms (blue curve) and all the G<sub>3...
<p>(a) Time course of root mean square deviations (RMSDs) of wild-type CycT1 (left) and CycT1 mutant...
<p>A, B, C: RMSD of hNaa50p backbone with MLG, EEE and in the <i>apo</i> form, respectively. D, E: R...
<p>A) Average of the backbone RMSD (without loops) of ten opening ED simulations. The open crystal s...
<p>(A) Plot of the Backbone RMSD of TAZ2 along the simulation. The MD was fitted against the average...
<p>(a) to (c), The RMSD curves for the WT—ErbB-2, WT—IGF-1R and WT—c-Met systems, respectively. (d) ...
<p>(A) The MD simulations of 1-17-2 Fab and the 30 mutants. The curves indicate the RMSD value chang...
<p>Comparison of RMSF curves (a), overall RMSD curves (b) and local RMSD curves in mutant regions N3...
<p>Root mean square deviation (RMSD) from the crystallographic structures of the C<sup>α</sup> atoms...
<p>RMSDs were calculated for the main-chain atoms, using the initial, energy minimized structure as ...
<p>The side chain root-mean-square fluctuations (RMSF) of the EcRDBD point mutants and the UspDBD (s...
<p>Gray line: RMSD evaluated along the 250 ns of the MD-XR trajectory. Orange: RMSD evaluated along ...
<p>(A) Backbone RMSD with respect to the starting structure during the entire course of 100 ns MD si...
<p>(A) Control plots representing the stability of the models during the molecular dynamics run. The...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>The root-mean-square deviations (RMSDs) of MTHase backbone atoms (blue curve) and all the G<sub>3...
<p>(a) Time course of root mean square deviations (RMSDs) of wild-type CycT1 (left) and CycT1 mutant...
<p>A, B, C: RMSD of hNaa50p backbone with MLG, EEE and in the <i>apo</i> form, respectively. D, E: R...
<p>A) Average of the backbone RMSD (without loops) of ten opening ED simulations. The open crystal s...
<p>(A) Plot of the Backbone RMSD of TAZ2 along the simulation. The MD was fitted against the average...
<p>(a) to (c), The RMSD curves for the WT—ErbB-2, WT—IGF-1R and WT—c-Met systems, respectively. (d) ...
<p>(A) The MD simulations of 1-17-2 Fab and the 30 mutants. The curves indicate the RMSD value chang...
<p>Comparison of RMSF curves (a), overall RMSD curves (b) and local RMSD curves in mutant regions N3...
<p>Root mean square deviation (RMSD) from the crystallographic structures of the C<sup>α</sup> atoms...
<p>RMSDs were calculated for the main-chain atoms, using the initial, energy minimized structure as ...