<p>The first two columns are the physiological space (first colum: flux vs. , second column: vs ), and the last two columns are the enzyme space (third column: viable enzyme space with all enzymes, fourth column: selected 2D slices from the third column at ). fig:FluxFeasToy: Optimal flux as feasibility criterion for function. fig:HomeostasisFeasToy: Homeostasis of the both metabolites as feasibility criterion. fig:PromptFeasToy: Turn-over time as feasibility criterion for temporal responsiveness. The red-blue color gradient indicates continuous values for the feasibility criteria in consideration, red indicates feasible states while blue indicates infeasible states The feasibility criteria are , for function, homeostasis and temporal resp...
<p>Time evolution of: populations by cell type (top), local fitness by cell type (middle), and neigh...
In the cost vector plots, panels a) and b), the red vector denotes the optimal solution in the unper...
<p>Predicted metabolic phases as a function of the concentration of protein aggregates and the energ...
<p>fig:ObjSpace represents the objective space, where each feasibility criterion is taken along (no ...
<p>Panel fig:Feasibility-FBA illustrates constraint-based modeling often used within Flux Balance An...
<p>In each plot, the dots (•) describe the sampled enzyme levels relative to reference state, colore...
<p><b> on </b><b> on the feasible enzyme space with respect to homeostasis (</b><b>) and function (<...
<p>fig:ToyModel: The metabolic reaction network used. The solid arrows represent the base network an...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
A: The range of flux potentially available in three reactions is represented by the white bars (from...
Background: Flux Balance Analysis (FBA) is a widely used tool to model metabolic behavior and cellul...
<p>We consider three ways to analyze changes in metabolism that relate an ancestor (Anc, blue) to an...
<p><b>a</b>) Toy-model: <i>R1</i> to <i>R7</i> and <i>A</i> to <i>D</i> represent reactions and meta...
<p>Time evolution of: populations by cell type (top), local fitness by cell type (middle), and neigh...
In the cost vector plots, panels a) and b), the red vector denotes the optimal solution in the unper...
<p>Predicted metabolic phases as a function of the concentration of protein aggregates and the energ...
<p>fig:ObjSpace represents the objective space, where each feasibility criterion is taken along (no ...
<p>Panel fig:Feasibility-FBA illustrates constraint-based modeling often used within Flux Balance An...
<p>In each plot, the dots (•) describe the sampled enzyme levels relative to reference state, colore...
<p><b> on </b><b> on the feasible enzyme space with respect to homeostasis (</b><b>) and function (<...
<p>fig:ToyModel: The metabolic reaction network used. The solid arrows represent the base network an...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, t...
A: The range of flux potentially available in three reactions is represented by the white bars (from...
Background: Flux Balance Analysis (FBA) is a widely used tool to model metabolic behavior and cellul...
<p>We consider three ways to analyze changes in metabolism that relate an ancestor (Anc, blue) to an...
<p><b>a</b>) Toy-model: <i>R1</i> to <i>R7</i> and <i>A</i> to <i>D</i> represent reactions and meta...
<p>Time evolution of: populations by cell type (top), local fitness by cell type (middle), and neigh...
In the cost vector plots, panels a) and b), the red vector denotes the optimal solution in the unper...
<p>Predicted metabolic phases as a function of the concentration of protein aggregates and the energ...