<p>The evolution of (A) viral diversity, <i>d<sub>G</sub></i>, (B) divergence, <i>d<sub>S</sub></i>, and (C) average fitness, <i>f</i>, with generations predicted by our simulations for different population sizes, <i>C</i>. Each cell is assumed to be infected with <i>M</i> virions drawn from a distribution based on a viral dynamics model (see text). Error bars represent standard deviations.</p
a<p>The mutation frequency is the average of ten simulations and is expressed as the number of mutat...
<p>Orange and blue bars correspond to runs with and without recombination, respectively. Panel A sho...
<p>Phylogenetic trees are based on samples of directly measured virus genealogy in the simulation, a...
<p>The evolution of (A) viral diversity, <i>d<sub>G</sub></i>, (B) divergence, <i>d<sub>S</sub></i>,...
<p>The evolution of viral diversity, <i>d<sub>G</sub></i>, with generations predicted by our simulat...
<p>(A) The frequencies of proviral genomes in different Hamming classes at various times (generation...
<p>The time-dependent solution of the evolutionary virus dynamics simulation is presented (please no...
International audienceHigh-throughput sequencing has opened the route for a deep assessment of withi...
Panel (a) shows the noisy behaviour of three genetic diversity statistics (y-axis) from an individua...
Recent studies on evolutionarily distant viral groups have shown that the number of viral ge-nomes t...
<p>Dynamics of divergence and diversity when imposing a greater level of fitness for certain types o...
(a) An individual forward-dream simulation where the number of vectors (Nv) is reduced at time zero ...
We describe a stochastic virus evolutionmodel representing genomic diversification and within-host s...
<p>Curves indicate the prediction obtained using log<sub>10 </sub><i>a</i> = 2.387, <i>b</i> = 3.744...
<p>Each point is the mean (<i>n</i> = 3, ± standard error of the mean) change in log<sub>10</sub> fi...
a<p>The mutation frequency is the average of ten simulations and is expressed as the number of mutat...
<p>Orange and blue bars correspond to runs with and without recombination, respectively. Panel A sho...
<p>Phylogenetic trees are based on samples of directly measured virus genealogy in the simulation, a...
<p>The evolution of (A) viral diversity, <i>d<sub>G</sub></i>, (B) divergence, <i>d<sub>S</sub></i>,...
<p>The evolution of viral diversity, <i>d<sub>G</sub></i>, with generations predicted by our simulat...
<p>(A) The frequencies of proviral genomes in different Hamming classes at various times (generation...
<p>The time-dependent solution of the evolutionary virus dynamics simulation is presented (please no...
International audienceHigh-throughput sequencing has opened the route for a deep assessment of withi...
Panel (a) shows the noisy behaviour of three genetic diversity statistics (y-axis) from an individua...
Recent studies on evolutionarily distant viral groups have shown that the number of viral ge-nomes t...
<p>Dynamics of divergence and diversity when imposing a greater level of fitness for certain types o...
(a) An individual forward-dream simulation where the number of vectors (Nv) is reduced at time zero ...
We describe a stochastic virus evolutionmodel representing genomic diversification and within-host s...
<p>Curves indicate the prediction obtained using log<sub>10 </sub><i>a</i> = 2.387, <i>b</i> = 3.744...
<p>Each point is the mean (<i>n</i> = 3, ± standard error of the mean) change in log<sub>10</sub> fi...
a<p>The mutation frequency is the average of ten simulations and is expressed as the number of mutat...
<p>Orange and blue bars correspond to runs with and without recombination, respectively. Panel A sho...
<p>Phylogenetic trees are based on samples of directly measured virus genealogy in the simulation, a...