Additional file 1: Figures S1–S8. Tables S1, S2. of A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data

Figure S1. Single-gene phylogeny with multiple cross contaminations. Figure S2. Comparison between transcript categorisation by CroCo and a reference set of manually detected cross contaminations. Figure S3. Benchmarking CroCo using simulations. Figure S4. Network visualisation of cross contamination patterns in dataset B. Figure S5. Network visualisation of cross contamination patterns in dataset C. Figure S6. Network visualisation of cross contamination patterns in dataset D. Figure S7. Network visualisation of cross contamination patterns in dataset E. Figure S8. Network visualisation of cross contamination patterns in dataset F. Table S1. Datasets from six recent sequencing projects analysed with CroCo. Table S2. Effect of fold difference parameter value on transcript categorisations. (DOCX 1979 kb