Supplementary text 1.1: Filter Sensitivity Analysis. Supplementary text 1.2: Investigating Highly Distinct Isolates. Supplementary text 1.3: Temporal Signal. Supplementary text 1.4: Hierarchical Model Selection. Supplementary text 1.5: Influence of the Priors. Table S1. Results from investigating highly distinct isolates. Table S2. Results from hierarchical model selection. (DOCX 36Â kb
Clusters Identified by Shared Uncommon Spoligotypes. This table summarizes the isolates that were se...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Mycobacterium tuberculosis resistance to anti-tuberculosis drugs is a major threat to global public ...
Appendix E. Factors affecting the number of polymorphisms detected in sequences. (DOCX 18 kb
Isolates Selected for WGS from Clusters Identified by Identical Genetic Fingerprints. This table sum...
Table S1. Sequencing statistics of the 18Â M. tuberculosis isolates. Note: A, B, C, and D indicate t...
Comparison of the Sensitivity and Specificity of Standard Mtb Fingerprinting against Whole Genome Se...
Manhattan plots displaying results of chromosomal association analyses of three bovine tuberculosis ...
Multi-dimensional scaling (Principal Component) analysis of an identity by state matrix of 804 bulls...
Unique variants identified in the single colony comparison analysis. (XLSX 45 kb
Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...
Strain information and full results table for clinically-derived Malawi samples, in silico replicate...
Epidemiologically Identified Clusters. This table summarizes the isolates that were selected for WGS...
Figure S1. The profile of 1110 isolates. (a) The distribution of isolates in three studies. (b) The ...
Genes Containing Intra-cluster SNPs. This table displays the genes and mutation sites where SNPs tha...
Clusters Identified by Shared Uncommon Spoligotypes. This table summarizes the isolates that were se...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Mycobacterium tuberculosis resistance to anti-tuberculosis drugs is a major threat to global public ...
Appendix E. Factors affecting the number of polymorphisms detected in sequences. (DOCX 18 kb
Isolates Selected for WGS from Clusters Identified by Identical Genetic Fingerprints. This table sum...
Table S1. Sequencing statistics of the 18Â M. tuberculosis isolates. Note: A, B, C, and D indicate t...
Comparison of the Sensitivity and Specificity of Standard Mtb Fingerprinting against Whole Genome Se...
Manhattan plots displaying results of chromosomal association analyses of three bovine tuberculosis ...
Multi-dimensional scaling (Principal Component) analysis of an identity by state matrix of 804 bulls...
Unique variants identified in the single colony comparison analysis. (XLSX 45 kb
Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...
Strain information and full results table for clinically-derived Malawi samples, in silico replicate...
Epidemiologically Identified Clusters. This table summarizes the isolates that were selected for WGS...
Figure S1. The profile of 1110 isolates. (a) The distribution of isolates in three studies. (b) The ...
Genes Containing Intra-cluster SNPs. This table displays the genes and mutation sites where SNPs tha...
Clusters Identified by Shared Uncommon Spoligotypes. This table summarizes the isolates that were se...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Mycobacterium tuberculosis resistance to anti-tuberculosis drugs is a major threat to global public ...