Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Additional file 1: of Prevalence of bovine tuberculosis in cattle, goats, and camels of traditional livestock raising communities in Eritrea

Michael Ghebremariam (3418493)
A. Michel (3418508)
J. Vernooij (3418511)
M. Nielen (3418496)
V. Rutten (3418505)

March 2018

Regions, sub-regions and villages included in the study, and species, breed, sex and age of each ani...

Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data.

S C Ring
D C Purfield
M Good
P Breslin
E Ryan
A Blom
R D Evans
M L Doherty
D G Bradley
D P Berry

January 2019

Bovine tuberculosis (bTB) is an infectious disease of cattle generally caused by Mycobacterium bovis...

Additional file 3: Figure S2. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of tRNAs and corresponding codons in the Uruguayan genomes under study. (PDF 66 kb

Additional file 7: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sรกnchez-Molano (3504275)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Manhattan plots displaying results of chromosomal association analyses of three bovine tuberculosis ...

Additional file 6: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sánchez-Molano (3858661)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Linkage disequilibrium (r2) map of a QTL region on BTA 23 affecting bTB (phenotype 2). The region ra...

Additional file 5: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sánchez-Molano (3858661)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Linkage disequilibrium (r2) map of a QTL region on BTA 2 affecting bTB (phenotype 1). The region ran...

Additional file 1: of Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand

Joseph Crispell (3755236)
Ruth Zadoks (2589703)
Simon Harris (137272)
Brent Paterson (3755230)
Desmond Collins (3755233)
Geoffrey de-Lisle (3755224)
Paul Livingstone (3755227)
Mark Neill (3755221)
Roman Biek (21981)
Samantha Lycett (3311286)
Rowland Kao (330135)
Marian Price-Carter (2412403)

February 2017

Supplementary text 1.1: Filter Sensitivity Analysis. Supplementary text 1.2: Investigating Highly Di...

Additional file 1: Figure S1. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Sequencing and genome annotation statistics for the 23 Uruguayan strains of M. bovis. (PDF 115 kb

Additional file 1: of Prevalence and risk factors of bovine tuberculosis in dairy cattle in Eritrea

Michael Ghebremariam (3418493)
V. Rutten (3418505)
J. Vernooij (3418511)
K. Uqbazghi (3418517)
T. Tesfaalem (3418499)
T. Butsuamlak (3418502)
A. Idris (3418514)
M. Nielen (3418496)
A. Michel (3418508)

May 2016

Frequency of skin thickness (mm) after 72 h post inoculation in both the avian and bovine sites and ...

Additional file 5: of Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

S. Wilkinson (4171426)
S.C. Bishop (4171435)
A.R. Allen (4171417)
S.H. McBride (4171432)
R.A. Skuce (4171423)
M. Bermingham (4171429)
J.A. Woolliams (4171414)
E.J. Glass (4171420)

June 2017

Genome-wide association analysis for NVLs vs VLs a Manhattan plot displaying the –log10(P- value) of...

Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data

S. C. Ring (6335705)
D. C. Purfield (6335708)
M. Good (6335711)
P. Breslin (6335714)
E. Ryan (6335717)
A. Blom (6335720)
R. D. Evans (6335723)
M. L. Doherty (6335726)
D. G. Bradley (6335729)
D. P. Berry (6335732)

February 2019

Bovine tuberculosis (bTB) is an infectious disease of cattle generally caused by Mycobacterium bovis...

Additional file 1: Figure S1. of Bovine tuberculosis visible lesions in cattle culled during herd breakdowns: the effects of individual characteristics, trade movement and co-infection

Andrew Byrne (790932)
Jordon Graham (4724913)
Craig Brown (75655)
Aoibheann Donaghy (4724916)
Maria Guelbenzu-Gonzalo (4724919)
Jim McNair (3459827)
Robin Skuce (790934)
Adrian Allen (624953)
Stanley McDowell (116923)

December 2017

Graphical exploratory assessment of the relationship between the probability of bovine TB visible le...

Additional file 9: of Genome-wide association study of Mycobacterium avium subspecies Paratuberculosis infection in Chinese Holstein

Yahui Gao (776538)
Jianping Jiang (149448)
Shaohua Yang (143807)
Jie Cao (353200)
Bo Han (84102)
Yachun Wang (155485)
Yi Zhang (9093)
Ying Yu (7066)
Shengli Zhang (110370)
Qin Zhang (58638)
Lingzhao Fang (4023761)
Bonnie Cantrell (6161264)
Dongxiao Sun (155488)

December 2018

Table S4. Functional enrichment of GO and Pathway analysis of 343 genes. (XLSX 32 kb

Additional file 2: of Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle

Hugo Carignano (4852093)
Dana Roldan (4852078)
MarĂa Beribe (4852099)
MarĂa Raschia (4852102)
Ariel Amadio (3360812)
Juan Nani (4852090)
GerĂłnimo Gutierrez (4852096)
Irene Alvarez (466159)
Karina Trono (466160)
Mario Poli (522376)
Marcos Miretti (77348)

February 2018

Figure S2. Holstein and Jersey crosses population sub-structure. Each point represents the coordinat...

Additional file 13: Table S8. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Details on the distinctive characteristics defining each of the three groups described in this study...

Additional file 1: of Prevalence of bovine tuberculosis in cattle, goats, and camels of traditional livestock raising communities in Eritrea

Michael Ghebremariam (3418493)
A. Michel (3418508)
J. Vernooij (3418511)
M. Nielen (3418496)
V. Rutten (3418505)

March 2018

Regions, sub-regions and villages included in the study, and species, breed, sex and age of each ani...

Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data.

S C Ring
D C Purfield
M Good
P Breslin
E Ryan
A Blom
R D Evans
M L Doherty
D G Bradley
D P Berry

January 2019

Bovine tuberculosis (bTB) is an infectious disease of cattle generally caused by Mycobacterium bovis...

Additional file 3: Figure S2. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of tRNAs and corresponding codons in the Uruguayan genomes under study. (PDF 66 kb

Additional file 7: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sรกnchez-Molano (3504275)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Manhattan plots displaying results of chromosomal association analyses of three bovine tuberculosis ...

Additional file 6: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sánchez-Molano (3858661)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Linkage disequilibrium (r2) map of a QTL region on BTA 23 affecting bTB (phenotype 2). The region ra...

Additional file 5: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Kethusegile Raphaka (3858487)
Oswald Matika (561285)
Enrique Sánchez-Molano (3858661)
Raphael Mrode (3201009)
Mike Coffey (3207387)
Valentina Riggio (3291318)
Elizabeth Glass (14089)
John Woolliams (3525701)
Stephen Bishop (2150092)
Georgios Banos (357423)

March 2017

Linkage disequilibrium (r2) map of a QTL region on BTA 2 affecting bTB (phenotype 1). The region ran...

Additional file 1: of Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand

Joseph Crispell (3755236)
Ruth Zadoks (2589703)
Simon Harris (137272)
Brent Paterson (3755230)
Desmond Collins (3755233)
Geoffrey de-Lisle (3755224)
Paul Livingstone (3755227)
Mark Neill (3755221)
Roman Biek (21981)
Samantha Lycett (3311286)
Rowland Kao (330135)
Marian Price-Carter (2412403)

February 2017

Supplementary text 1.1: Filter Sensitivity Analysis. Supplementary text 1.2: Investigating Highly Di...

Additional file 1: Figure S1. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Sequencing and genome annotation statistics for the 23 Uruguayan strains of M. bovis. (PDF 115 kb

Additional file 1: of Prevalence and risk factors of bovine tuberculosis in dairy cattle in Eritrea

Michael Ghebremariam (3418493)
V. Rutten (3418505)
J. Vernooij (3418511)
K. Uqbazghi (3418517)
T. Tesfaalem (3418499)
T. Butsuamlak (3418502)
A. Idris (3418514)
M. Nielen (3418496)
A. Michel (3418508)

May 2016

Frequency of skin thickness (mm) after 72 h post inoculation in both the avian and bovine sites and ...

Additional file 5: of Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

S. Wilkinson (4171426)
S.C. Bishop (4171435)
A.R. Allen (4171417)
S.H. McBride (4171432)
R.A. Skuce (4171423)
M. Bermingham (4171429)
J.A. Woolliams (4171414)
E.J. Glass (4171420)

June 2017

Genome-wide association analysis for NVLs vs VLs a Manhattan plot displaying the –log10(P- value) of...

Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data

S. C. Ring (6335705)
D. C. Purfield (6335708)
M. Good (6335711)
P. Breslin (6335714)
E. Ryan (6335717)
A. Blom (6335720)
R. D. Evans (6335723)
M. L. Doherty (6335726)
D. G. Bradley (6335729)
D. P. Berry (6335732)

February 2019

Bovine tuberculosis (bTB) is an infectious disease of cattle generally caused by Mycobacterium bovis...

Additional file 1: Figure S1. of Bovine tuberculosis visible lesions in cattle culled during herd breakdowns: the effects of individual characteristics, trade movement and co-infection

Andrew Byrne (790932)
Jordon Graham (4724913)
Craig Brown (75655)
Aoibheann Donaghy (4724916)
Maria Guelbenzu-Gonzalo (4724919)
Jim McNair (3459827)
Robin Skuce (790934)
Adrian Allen (624953)
Stanley McDowell (116923)

December 2017

Graphical exploratory assessment of the relationship between the probability of bovine TB visible le...

Additional file 9: of Genome-wide association study of Mycobacterium avium subspecies Paratuberculosis infection in Chinese Holstein

Yahui Gao (776538)
Jianping Jiang (149448)
Shaohua Yang (143807)
Jie Cao (353200)
Bo Han (84102)
Yachun Wang (155485)
Yi Zhang (9093)
Ying Yu (7066)
Shengli Zhang (110370)
Qin Zhang (58638)
Lingzhao Fang (4023761)
Bonnie Cantrell (6161264)
Dongxiao Sun (155488)

December 2018

Table S4. Functional enrichment of GO and Pathway analysis of 343 genes. (XLSX 32 kb

Additional file 2: of Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle

Hugo Carignano (4852093)
Dana Roldan (4852078)
MarĂa Beribe (4852099)
MarĂa Raschia (4852102)
Ariel Amadio (3360812)
Juan Nani (4852090)
GerĂłnimo Gutierrez (4852096)
Irene Alvarez (466159)
Karina Trono (466160)
Mario Poli (522376)
Marcos Miretti (77348)

February 2018

Figure S2. Holstein and Jersey crosses population sub-structure. Each point represents the coordinat...

Additional file 13: Table S8. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

Details on the distinctive characteristics defining each of the three groups described in this study...

Additional file 1: of Prevalence of bovine tuberculosis in cattle, goats, and camels of traditional livestock raising communities in Eritrea

Michael Ghebremariam (3418493)
A. Michel (3418508)
J. Vernooij (3418511)
M. Nielen (3418496)
V. Rutten (3418505)

March 2018

Regions, sub-regions and villages included in the study, and species, breed, sex and age of each ani...

Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data.

S C Ring
D C Purfield
M Good
P Breslin
E Ryan
A Blom
R D Evans
M L Doherty
D G Bradley
D P Berry

January 2019

Bovine tuberculosis (bTB) is an infectious disease of cattle generally caused by Mycobacterium bovis...

Additional file 3: Figure S2. of Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Moira Lasserre (4064500)
Pablo Fresia (465613)
Gonzalo Greif (4728270)
Gregorio Iraola (144706)
Miguel Castro-Ramos (4728276)
Arturo Juambeltz (4728267)
Álvaro Nuñez (4728273)
Hugo Naya (144710)
Carlos Robello (238938)
Luisa Berná (4288387)

January 2018

List of tRNAs and corresponding codons in the Uruguayan genomes under study. (PDF 66 kb

Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Abstract

Extracted data

Additional file 1: of Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Abstract

Extracted data

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