Additional file 3: of Characterization of the human RFX transcription factor family by regulatory and target gene analysis

Supporting tables, figures and supplementary references. Table S1. Summary of RFX1–8 expression data and novel transcript validation. Table S2. Positions of functional domains encoded by RFX transcripts. Table S3. Experimentally proven, direct RFX target genes in humans from the literature. Table S4. Human X-box motifs selected from the JASPAR database. Table S5. Experimentally validated human X-box motif sequences in promoter regions that were captured by the scanning criteria. Table S6. Experimentally validated human X-box motif sequences that were either in distal regions or that were not captured by the scanning criteria. Table S7. RFX correlated enhancers within +/− 500 kb of RFX TSS locations. Table S8. Primer sequences for novel RFX transcripts validation. Table S9. Verified novel RFX transcript sequences. Table S10. siRNA sequences for candidate RFX regulators. Table S11. qPCR primer sequences and amplification efficiencies for validation of candidate RFX regulators. Figure S1. Human RFX1–8 DBD protein sequence alignment. Supplementary references. (DOCX 424 kb