Detailed candidate RFX regulator oPOSSUM3 scanning results using JASPAR 2016 core vertebrate TF binding profiles. Transcription factor binding sites (TFBS) scanning results from oPOSSUM3 within the promoter and enhancer regions of RFX1â8 using the CORE vertebrate TF binding profiles in JASPAR 2016. Included are the DNA regions that were considered as foreground and the following TF binding site details: SP2 (specificity protein 2) (JASPAR profile MA0516.1) and ESR1 (estrogen receptor alpha) (MA0112.3). (XLSX 50 kb
Top ten transcription factor binding sites (TFBSs) over-represented in promoter sequence of genes th...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...
Supporting tables, figures and supplementary references. Table S1. Summary of RFX1–8 expression data...
Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) ...
Hierarchical clustering, expression plots and top 10 tissues, primary cells and cell lines of RFX TS...
Ct levels of qRT-PCR, used for validation of candidate RFX regulators by siRNA knockdown. Individual...
Background: Evolutionarily conserved RFX transcription factors (TFs) regulate their...
Abstract Background Five regulatory factor X (RFX) transcription factors (TFs)–RFX1-5–have been prev...
BACKGROUND:Five regulatory factor X (RFX) transcription factors (TFs)-RFX1-5-have been previously ch...
CAGE clusters and genes mapped to putative TE-derived promoters: contains the list of CAGE clusters ...
Consensus sequence of the transcription factor binding sites and matrix attachment regions identifie...
TEs with putative promoter activity: contains the list of genomic locations for TEs with putative pr...
Figure S4. TRANSFAC predictions of transcription factor binding sites within elements active in musc...
JASPAR (http://jaspar.genereg.net) is an open-access database storing curated, non-redundant transcr...
Top ten transcription factor binding sites (TFBSs) over-represented in promoter sequence of genes th...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...
Supporting tables, figures and supplementary references. Table S1. Summary of RFX1–8 expression data...
Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) ...
Hierarchical clustering, expression plots and top 10 tissues, primary cells and cell lines of RFX TS...
Ct levels of qRT-PCR, used for validation of candidate RFX regulators by siRNA knockdown. Individual...
Background: Evolutionarily conserved RFX transcription factors (TFs) regulate their...
Abstract Background Five regulatory factor X (RFX) transcription factors (TFs)–RFX1-5–have been prev...
BACKGROUND:Five regulatory factor X (RFX) transcription factors (TFs)-RFX1-5-have been previously ch...
CAGE clusters and genes mapped to putative TE-derived promoters: contains the list of CAGE clusters ...
Consensus sequence of the transcription factor binding sites and matrix attachment regions identifie...
TEs with putative promoter activity: contains the list of genomic locations for TEs with putative pr...
Figure S4. TRANSFAC predictions of transcription factor binding sites within elements active in musc...
JASPAR (http://jaspar.genereg.net) is an open-access database storing curated, non-redundant transcr...
Top ten transcription factor binding sites (TFBSs) over-represented in promoter sequence of genes th...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...