<p>(<b>A</b>) To select the set of proteins that best correlate with growth, we chose an <i>R</i><sup>2</sup> cutoff of 0.367, or 0.371 for a set that excludes UPR-cyto proteins (inset). (<b>B</b>) The predicted growth differences between paired strains, when each pair is held out from the dataset used to calibrate the proteomic growth model, fall within one standard deviation of each experimental measurement [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075320#B4" target="_blank">4</a>]. The UPR-cyto excluding model generates similar predictions (inset). Both models’ predictions have smaller standard deviations (vertical error) than growth measurements (horizontal error).</p
<p>Parameter values for the simulation (<b>a</b>,<b>b</b>,<b>c</b>) are <i>k<sub>1</sub></i> = 1.6⋅1...
Most proteins show changes in level across growth conditions. Many of these changes seem to be coord...
<p>(<b>A</b>) Efficiency of FRET between HtpG-YFP or HtpG(E34A)-YFP and FliN-CFP or CFP-CheA as a fu...
<p>(<b>A</b>) The average % growth rate difference relative to the ‘wt’ strain in each pair (figure ...
<p>Expected differences in protein abundance levels are inferred from transcript data [<a href="http...
<p>(<b>A</b>) To validate that the ME-Model accurately quantifies protein cost, we compare the predi...
Genome-scale metabolic reconstructions are typically validated by comparing in silico growth predict...
<p>Reaction deleted only if no functional enzyme complex associated with the reaction remains after ...
<p>A, Rate of cell size increase (shown as growth rate, in fl/min) for the indicated strains was mea...
Most proteins show changes in level across growth conditions. Many of these changes seem to be coord...
a<p>The growth rates of the strains were measured in the presence of the indicated amount of INP0404...
<p>Ribosomal proteins are stacked in green on top of the non ribosomal proteins, marked in blue. Pro...
Countless studies monitor the growth rate of microbial populations as a measure of fitness. However,...
<p>PPH-1 – PolyPhen-1; PPH-2 – PolyPhen-2; PMD dataset – dataset from Protein Mutant Database; MMP –...
<p>To determine which protein and expression levels are most relevant for the amount of abnormal pro...
<p>Parameter values for the simulation (<b>a</b>,<b>b</b>,<b>c</b>) are <i>k<sub>1</sub></i> = 1.6⋅1...
Most proteins show changes in level across growth conditions. Many of these changes seem to be coord...
<p>(<b>A</b>) Efficiency of FRET between HtpG-YFP or HtpG(E34A)-YFP and FliN-CFP or CFP-CheA as a fu...
<p>(<b>A</b>) The average % growth rate difference relative to the ‘wt’ strain in each pair (figure ...
<p>Expected differences in protein abundance levels are inferred from transcript data [<a href="http...
<p>(<b>A</b>) To validate that the ME-Model accurately quantifies protein cost, we compare the predi...
Genome-scale metabolic reconstructions are typically validated by comparing in silico growth predict...
<p>Reaction deleted only if no functional enzyme complex associated with the reaction remains after ...
<p>A, Rate of cell size increase (shown as growth rate, in fl/min) for the indicated strains was mea...
Most proteins show changes in level across growth conditions. Many of these changes seem to be coord...
a<p>The growth rates of the strains were measured in the presence of the indicated amount of INP0404...
<p>Ribosomal proteins are stacked in green on top of the non ribosomal proteins, marked in blue. Pro...
Countless studies monitor the growth rate of microbial populations as a measure of fitness. However,...
<p>PPH-1 – PolyPhen-1; PPH-2 – PolyPhen-2; PMD dataset – dataset from Protein Mutant Database; MMP –...
<p>To determine which protein and expression levels are most relevant for the amount of abnormal pro...
<p>Parameter values for the simulation (<b>a</b>,<b>b</b>,<b>c</b>) are <i>k<sub>1</sub></i> = 1.6⋅1...
Most proteins show changes in level across growth conditions. Many of these changes seem to be coord...
<p>(<b>A</b>) Efficiency of FRET between HtpG-YFP or HtpG(E34A)-YFP and FliN-CFP or CFP-CheA as a fu...