<p>Histogram plot of the percentage of reads aligned (averaged over 10 runs) for each viral genome shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0076935#pone-0076935-t002" target="_blank">Table 2</a> and each aligner. Reads crossing splice junction regions are shown in pink, reads not crossing splice junction regions are shown in blue.</p
<p>This graph plots the number of hits (X-axis) against the EASE score (Y-axis). The difference betw...
<p>PBCV-1 genes on the forward and reverse strands are depicted by red and blue boxes respectively. ...
<p>The alignment covers the centromeric side of the DR–DQ 158-kb DNA segment (left half, low variati...
<p>Histogram plot of the average alignment accuracy averaged over 10 runs for each viral genome show...
<p>Histogram plot of the average accuracy as a function of the mutation rate for each aligner averag...
<p>Average and standard deviation of aligned reads spanning viral splice junctions during the time c...
<p>Mapped sequence reads of input (top) and pellet (bottom) from one biological replicate for the re...
<p>The top panels show visualization of read alignment in good (a) and bad (b) conditions using the ...
<p>In each pair, the upper plot gives the normalised MPD (<i>x</i><sub><i>i</i></sub>) with ignored ...
<p>The over-all homology between sequences is shown as a straight line on the diagonal, while region...
<p>Each plot shows the fold coverage for the alignment of the corresponding strain to H37Rv around t...
The proportion of simulated reads which successfully aligned is defined for each locus by the ratio ...
<p>(a) Length distribution of synthetic long reads (minimum length 500 bp) from HCT116 mRNA. (b) Len...
<p>The <i>x</i>-axis shows the genome position and <i>y</i>-axis indicates read depth in logarithmic...
<p>All reads for each sample (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.p...
<p>This graph plots the number of hits (X-axis) against the EASE score (Y-axis). The difference betw...
<p>PBCV-1 genes on the forward and reverse strands are depicted by red and blue boxes respectively. ...
<p>The alignment covers the centromeric side of the DR–DQ 158-kb DNA segment (left half, low variati...
<p>Histogram plot of the average alignment accuracy averaged over 10 runs for each viral genome show...
<p>Histogram plot of the average accuracy as a function of the mutation rate for each aligner averag...
<p>Average and standard deviation of aligned reads spanning viral splice junctions during the time c...
<p>Mapped sequence reads of input (top) and pellet (bottom) from one biological replicate for the re...
<p>The top panels show visualization of read alignment in good (a) and bad (b) conditions using the ...
<p>In each pair, the upper plot gives the normalised MPD (<i>x</i><sub><i>i</i></sub>) with ignored ...
<p>The over-all homology between sequences is shown as a straight line on the diagonal, while region...
<p>Each plot shows the fold coverage for the alignment of the corresponding strain to H37Rv around t...
The proportion of simulated reads which successfully aligned is defined for each locus by the ratio ...
<p>(a) Length distribution of synthetic long reads (minimum length 500 bp) from HCT116 mRNA. (b) Len...
<p>The <i>x</i>-axis shows the genome position and <i>y</i>-axis indicates read depth in logarithmic...
<p>All reads for each sample (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.p...
<p>This graph plots the number of hits (X-axis) against the EASE score (Y-axis). The difference betw...
<p>PBCV-1 genes on the forward and reverse strands are depicted by red and blue boxes respectively. ...
<p>The alignment covers the centromeric side of the DR–DQ 158-kb DNA segment (left half, low variati...