<p>Histogram plot of the average accuracy as a function of the mutation rate for each aligner averaged over the four viral genomes (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0076935#pone-0076935-t001" target="_blank">Table 1</a>).</p
<p>Histograms of the frequencies of numbers of differences between pairs of genomes in SNPs (A), gen...
<p>The boxes span the lower and upper quartile with the median indicated by a red bar; whiskers exte...
<p>Solid curves and points show the probability of fixation of a mutation as a function of its selec...
<p>Histogram plot of the average alignment accuracy averaged over 10 runs for each viral genome show...
<p>Histogram plot of the percentage of reads aligned (averaged over 10 runs) for each viral genome s...
<p>Mutation rate estimates from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pon...
<p>(A) Viral sequences sampled from an earlier time point (the outgroup alignment) are compared with...
<p>Mutation rate estimates from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pon...
<p><b>A.</b> Histogram showing the distribution of the number of stop codon mutations per sequencing...
<p>Curves indicate the prediction obtained using log<sub>10 </sub><i>a</i> = 2.387, <i>b</i> = 3.744...
<p>The average total, A3G, A3D/F/H, and RT mutation rate within a sliding window of 50 codons across...
<p>The five curves correspond to five independent runs. The red dashed lines correspond to the true ...
<p>All reads for each sample (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.p...
<p>Each point corresponds to an average over 1000 realizations. The error bars yield the standard de...
<p><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0024171#pone-0024171-g003" ...
<p>Histograms of the frequencies of numbers of differences between pairs of genomes in SNPs (A), gen...
<p>The boxes span the lower and upper quartile with the median indicated by a red bar; whiskers exte...
<p>Solid curves and points show the probability of fixation of a mutation as a function of its selec...
<p>Histogram plot of the average alignment accuracy averaged over 10 runs for each viral genome show...
<p>Histogram plot of the percentage of reads aligned (averaged over 10 runs) for each viral genome s...
<p>Mutation rate estimates from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pon...
<p>(A) Viral sequences sampled from an earlier time point (the outgroup alignment) are compared with...
<p>Mutation rate estimates from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pon...
<p><b>A.</b> Histogram showing the distribution of the number of stop codon mutations per sequencing...
<p>Curves indicate the prediction obtained using log<sub>10 </sub><i>a</i> = 2.387, <i>b</i> = 3.744...
<p>The average total, A3G, A3D/F/H, and RT mutation rate within a sliding window of 50 codons across...
<p>The five curves correspond to five independent runs. The red dashed lines correspond to the true ...
<p>All reads for each sample (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.p...
<p>Each point corresponds to an average over 1000 realizations. The error bars yield the standard de...
<p><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0024171#pone-0024171-g003" ...
<p>Histograms of the frequencies of numbers of differences between pairs of genomes in SNPs (A), gen...
<p>The boxes span the lower and upper quartile with the median indicated by a red bar; whiskers exte...
<p>Solid curves and points show the probability of fixation of a mutation as a function of its selec...
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