<p>(a) Length distribution of synthetic long reads (minimum length 500 bp) from HCT116 mRNA. (b) Length distribution of synthetic long reads (minimum length 500 bp) from HepG2 mRNA. (c) Box plots showing the number of splice junctions spanned by short reads and synthetic long reads. The axis is broken between 5–10 junctions spanned and the scale changed; a version with a standard axis is presented as <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0147229#pone.0147229.s012" target="_blank">S12 Fig</a>. Inset: 97% of the junctions identified in the synthetic reads are known, providing validation for the method.</p
<p><b>a</b>, Length distributions of full-length (FL) input reads, high-quality CCS reads, and ToFU ...
<p>The horizontal axis shows the distance in nucleotides from the 5′-end of the transcript (bin leng...
<p><b>A.</b> Metagene plot of the normalized RNA-seq reads centered on the 5′ PPP sites identified b...
Deep sequencing of transcriptome (RNA-seq) provides unprecedented opportunity to interrogate plausib...
<p>The x-axis indicates sequence sizes from 200 bp to ≥ 5000 bp with a bin size of 100; the y-axis i...
<p>A. Reads were mapped across mRNAs, then each mRNA was normalised to a standard length of 1000. Ar...
<p>The percentage of genes or splice junctions found in the indicated number of tissues over a set t...
Long-read sequencing can overcome some of the barriers in transcriptome assembly that plague short-r...
Influence of minimum length requirements on junction alignment and detection. (a) The average number...
Estimation of the relative transcript concentrations for different genes. The -axis shows the MAE (%...
Numerous high-throughput sequencing studies have focused on detecting conventionally spliced mRNAs i...
<p>Histogram of the sequence-length distribution of all transcripts including transcripts mapped to ...
<div><p>By using the unmapped tags in the Mouse Atlas Project that map to spliced tags predicted fro...
<p>This plot displays the estimates for the mean normalized read-pair coverage count for each exon a...
<div><p>(A) Fewer than 10% of introns in RefGene annotation were greater than 10,000 bp in length. P...
<p><b>a</b>, Length distributions of full-length (FL) input reads, high-quality CCS reads, and ToFU ...
<p>The horizontal axis shows the distance in nucleotides from the 5′-end of the transcript (bin leng...
<p><b>A.</b> Metagene plot of the normalized RNA-seq reads centered on the 5′ PPP sites identified b...
Deep sequencing of transcriptome (RNA-seq) provides unprecedented opportunity to interrogate plausib...
<p>The x-axis indicates sequence sizes from 200 bp to ≥ 5000 bp with a bin size of 100; the y-axis i...
<p>A. Reads were mapped across mRNAs, then each mRNA was normalised to a standard length of 1000. Ar...
<p>The percentage of genes or splice junctions found in the indicated number of tissues over a set t...
Long-read sequencing can overcome some of the barriers in transcriptome assembly that plague short-r...
Influence of minimum length requirements on junction alignment and detection. (a) The average number...
Estimation of the relative transcript concentrations for different genes. The -axis shows the MAE (%...
Numerous high-throughput sequencing studies have focused on detecting conventionally spliced mRNAs i...
<p>Histogram of the sequence-length distribution of all transcripts including transcripts mapped to ...
<div><p>By using the unmapped tags in the Mouse Atlas Project that map to spliced tags predicted fro...
<p>This plot displays the estimates for the mean normalized read-pair coverage count for each exon a...
<div><p>(A) Fewer than 10% of introns in RefGene annotation were greater than 10,000 bp in length. P...
<p><b>a</b>, Length distributions of full-length (FL) input reads, high-quality CCS reads, and ToFU ...
<p>The horizontal axis shows the distance in nucleotides from the 5′-end of the transcript (bin leng...
<p><b>A.</b> Metagene plot of the normalized RNA-seq reads centered on the 5′ PPP sites identified b...