<p>Proteins with sequences similar to the newly identified FDH-I were clustered based on their internal sequence similarities. Each node represents one of the protein sequences identified as homologous to fructose dehydrogenase from <i>Gluconobacter frateurii</i>; edges between nodes are drawn only if the similarity between a pair of sequences is better than an E-value threshold cutoff of 1e<sup>−66</sup>. The network is visualized using the organic layout in Cytoscape. Nodes are colored according to assigned function in UniProtKB database; yellow: 2-keto-gluconate dehydrogenase, blue: choline dehydrogenase, cyan: fructose dehydrogenase from <i>Gluconobacter frateurii,</i> red: gluconate dehydrogenase, green: glucose-methanol-choline dehydr...
<p>The nodes and edges represent the proteins (genes) and their interactions, respectively. Colored ...
The dramatic increase in heterogeneous types of biological data—in particular, the abundance of new ...
(A) Complete cluster built from 424 protein identifications. We used the 2-dimensional data on migra...
<p>The species of origin of the gene clusters are indicated at the top of each. Genes with orthologs...
<p>Each node represents one of the protein sequences identified as homologous to MPUS from <i>Microc...
<p>(A) The full sequence similarity network view of Main.2 displays all 1,642 non-redundant sequence...
<p>Each cluster is represented as a yellow circle, in which nodes show all terms included in the clu...
<p>ClueGO plugin of Cytoscape was used to generate a functional network (biological process). Node s...
<p>An automatic search for E. coli protein YebC (PDB code 1KON) represented with Cytoscape organic l...
Protein phylogeny of FdsC/FdhD homologues based on a full length multiple sequence alignment by Musc...
<p>All known genes for the different disease groups were concurrently analyzed for matching terms in...
Pathway analysis encompassing the top 150 meta-DEGs: (a) Representative network model of interaction...
<p>Example proteins from <i>S. cerevisiae</i> (‘y’ prefix) and humans (‘h’ prefix) for each function...
Next-generation sequencing has allowed many new protein sequences to be identified. However, this ex...
<p>The secondary structure of the GDH1E5 (CCK35875) was predicted by the online tool PSIPRED 3.0 and...
<p>The nodes and edges represent the proteins (genes) and their interactions, respectively. Colored ...
The dramatic increase in heterogeneous types of biological data—in particular, the abundance of new ...
(A) Complete cluster built from 424 protein identifications. We used the 2-dimensional data on migra...
<p>The species of origin of the gene clusters are indicated at the top of each. Genes with orthologs...
<p>Each node represents one of the protein sequences identified as homologous to MPUS from <i>Microc...
<p>(A) The full sequence similarity network view of Main.2 displays all 1,642 non-redundant sequence...
<p>Each cluster is represented as a yellow circle, in which nodes show all terms included in the clu...
<p>ClueGO plugin of Cytoscape was used to generate a functional network (biological process). Node s...
<p>An automatic search for E. coli protein YebC (PDB code 1KON) represented with Cytoscape organic l...
Protein phylogeny of FdsC/FdhD homologues based on a full length multiple sequence alignment by Musc...
<p>All known genes for the different disease groups were concurrently analyzed for matching terms in...
Pathway analysis encompassing the top 150 meta-DEGs: (a) Representative network model of interaction...
<p>Example proteins from <i>S. cerevisiae</i> (‘y’ prefix) and humans (‘h’ prefix) for each function...
Next-generation sequencing has allowed many new protein sequences to be identified. However, this ex...
<p>The secondary structure of the GDH1E5 (CCK35875) was predicted by the online tool PSIPRED 3.0 and...
<p>The nodes and edges represent the proteins (genes) and their interactions, respectively. Colored ...
The dramatic increase in heterogeneous types of biological data—in particular, the abundance of new ...
(A) Complete cluster built from 424 protein identifications. We used the 2-dimensional data on migra...