<p><sup>a</sup> The ensembles are obtained from MCMC simulations using either OPLS-AA/L with the GB/SA solvent model (OPLS) force field energy or OPLS energy plus a chemical shift energy term from from either ProCS or CamShift. Values are calculated over four runs on each of three protein structures, Ubiquitin, Protein G and SMN Tudor Domain, or their static X-ray structure.</p><p><sup>b</sup> The mean bond length deviation denotes the mean absolute difference between the mean hydrogen bond length observed in the sampled structures to the mean hydrogen bond length observed in the corresponding X-ray structure noted below.</p
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>Histograms are normalized (to an area of 1) to fit identical axes. Vertical lines indicate averag...
<p>Squares denote the average coupling constant observed for that hydrogen bond in the ensemble and ...
<p>Data is calculated over all amide-amide bonding pairs for which experimental spin-spin coupling ...
Proteins are the media through which genetic information is expressed. They are involved in most if ...
Proteins are the media through which genetic information is expressed. They are involved in most if ...
The continued development and utility of molecular dynamics simulations requires improvements in bot...
<div><p>The continued development and utility of molecular dynamics simulations requires improvement...
<p><b>(A)</b> The root mean square deviations (RMSDs) from the initial coordinates computed on the C...
a) and b) Atom-positional RMSD (Å) from the starting structures as observed during the two represent...
Molecular dynamics simulation is commonly employed to explore protein dynamics. Despite the disparat...
Molecular dynamics simulation is commonly employed to explore protein dynamics. Despite the disparat...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>Histograms are normalized (to an area of 1) to fit identical axes. Vertical lines indicate averag...
<p>Squares denote the average coupling constant observed for that hydrogen bond in the ensemble and ...
<p>Data is calculated over all amide-amide bonding pairs for which experimental spin-spin coupling ...
Proteins are the media through which genetic information is expressed. They are involved in most if ...
Proteins are the media through which genetic information is expressed. They are involved in most if ...
The continued development and utility of molecular dynamics simulations requires improvements in bot...
<div><p>The continued development and utility of molecular dynamics simulations requires improvement...
<p><b>(A)</b> The root mean square deviations (RMSDs) from the initial coordinates computed on the C...
a) and b) Atom-positional RMSD (Å) from the starting structures as observed during the two represent...
Molecular dynamics simulation is commonly employed to explore protein dynamics. Despite the disparat...
Molecular dynamics simulation is commonly employed to explore protein dynamics. Despite the disparat...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
International audienceFor three decades now, knowledge-based scoring functions that operate through ...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...