<p>Protein backbone RMSD of COX-1 model, over a time frame of 15ns (in black), shows stability in the last 5ns time frame, deviating about 0.35nm from the native structure whereas, protein backbone RMSD of COX-2 model, for 10ns (in red), achieved stability after 5ns and maintained till the final 10ns, with an average deviation of about 0.3nm. The plot has been generated using the GRACE plotting tool.</p
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>(A) Backbone-RMSD of zNOD1-NACHT, (B) Backbone-RMSD of zNOD2-NACHT, (C) Backbone-RMSD of mNLRC4-N...
<p>The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
In all three replicates the RMSD is still increasing at 500 ns, indicating that CmeC is not yet full...
<p>From top to bottom: Root mean square deviation (RMSD) of the protein backbone, <i>z</i> coordinat...
<p>RMSD graph shows the deviation of the backbone in the native (blue) and the mutant (green) form o...
<p>RMSD of amarogentin-COX-1 complex (black) shows an elevation in the deviation from the initial st...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>(A) Plot of root mean square deviation (RMSD) of Cα of TPX2-Aurora A (protein) and TPX2/Aurora A ...
Program to calculate Protein Stability Index from the sequence. ML models were developed based on e...
<p>(A) Control plots representing the stability of the models during the molecular dynamics run. The...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>(A) Backbone-RMSD of zNOD1-NACHT, (B) Backbone-RMSD of zNOD2-NACHT, (C) Backbone-RMSD of mNLRC4-N...
<p>The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
In all three replicates the RMSD is still increasing at 500 ns, indicating that CmeC is not yet full...
<p>From top to bottom: Root mean square deviation (RMSD) of the protein backbone, <i>z</i> coordinat...
<p>RMSD graph shows the deviation of the backbone in the native (blue) and the mutant (green) form o...
<p>RMSD of amarogentin-COX-1 complex (black) shows an elevation in the deviation from the initial st...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>For the complexes, the corresponding ligand RMSD-values are depicted as green curves.</p
<p>(A) Plot of root mean square deviation (RMSD) of Cα of TPX2-Aurora A (protein) and TPX2/Aurora A ...
Program to calculate Protein Stability Index from the sequence. ML models were developed based on e...
<p>(A) Control plots representing the stability of the models during the molecular dynamics run. The...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>In (A), RMSD values from the whole construct (NS3<sub>PRO</sub> F, black line) were compared with...
<p>(A) Backbone-RMSD of zNOD1-NACHT, (B) Backbone-RMSD of zNOD2-NACHT, (C) Backbone-RMSD of mNLRC4-N...