<p>From top to bottom: Root mean square deviation (RMSD) of the protein backbone, <i>z</i> coordinate (membrane normal) of the c.o.m. of the protein (corrected by removing the total membrane drift), the protein's radius of gyration (<i>R<sub>g</sub></i>), and the helical fraction recognized for the fold.</p
<p>Root-mean-squared-deviation (RMSD) from the starting conformation, radius of gyration (RadGyr), T...
<p>A: When structural information was available on PDB, we fit a sphere to the volume occupied by th...
(a) Root mean squared deviation (RMSD) of RNA aptamers, and (b) radius of gyration (Rg) for each RNA...
<p>The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>Protein backbone RMSD of COX-1 model, over a time frame of 15ns (in black), shows stability in th...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>Structural stability of the HIF-2α protein backbone compared between the simulated systems. For c...
<p>(A) The root-mean-square deviation (RMSD) for C<sub>α</sub> atoms of the protein (B) Potential en...
In all three replicates the RMSD is still increasing at 500 ns, indicating that CmeC is not yet full...
<p>Parameterization of coarse-grained models: Comparison between radius of gyration of various intri...
<p>a. Percentage of the population of protein in solution that accounts for measured R<sub>g</sub> v...
Systems where cations were removed saw increased RMSD values compared to equilibrium simulations, th...
We compare Mean Force Potential values of a large series of PDB models of proteins and peptides and ...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>Root-mean-squared-deviation (RMSD) from the starting conformation, radius of gyration (RadGyr), T...
<p>A: When structural information was available on PDB, we fit a sphere to the volume occupied by th...
(a) Root mean squared deviation (RMSD) of RNA aptamers, and (b) radius of gyration (Rg) for each RNA...
<p>The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...
<p>We generated samples for each loop. The mean value of the minimum RMSD of the loops (-axis) is ...
<p>Protein backbone RMSD of COX-1 model, over a time frame of 15ns (in black), shows stability in th...
<p>(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...
<p>Structural stability of the HIF-2α protein backbone compared between the simulated systems. For c...
<p>(A) The root-mean-square deviation (RMSD) for C<sub>α</sub> atoms of the protein (B) Potential en...
In all three replicates the RMSD is still increasing at 500 ns, indicating that CmeC is not yet full...
<p>Parameterization of coarse-grained models: Comparison between radius of gyration of various intri...
<p>a. Percentage of the population of protein in solution that accounts for measured R<sub>g</sub> v...
Systems where cations were removed saw increased RMSD values compared to equilibrium simulations, th...
We compare Mean Force Potential values of a large series of PDB models of proteins and peptides and ...
<p>The Comparative diagram for various calculations of Backbone RMSD by regarding N-domain, C-domain...
<p>Root-mean-squared-deviation (RMSD) from the starting conformation, radius of gyration (RadGyr), T...
<p>A: When structural information was available on PDB, we fit a sphere to the volume occupied by th...
(a) Root mean squared deviation (RMSD) of RNA aptamers, and (b) radius of gyration (Rg) for each RNA...