<p>The PMFs correspond to the separation of the monomers associated in right-handed interactions (R). The PMF profile was calculated in the case of the separation of the PLXA1 monomers associated in left-handed (L) within a DOPC bilayer. E<sub>min</sub> is the difference in free energy between the associated state and the full separation of the monomers. D<sub>min</sub> is the distance separating the center of mass of the backbone beads of the two helices at the minimum of the PMF profile. is the difference between the apparent dissociation free energy of the PLXA1 homodimer or the heterodimer (i) and the apparent dissociation free energy of the NRP1 homodimer (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.00977...
<p>The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 Å3.5 Å) (A) and ...
<p>Key interfacing residues depicted on the contact maps (<a href="http://www.plosone.org/article/in...
<p>(<i>A</i>–<i>C</i>) Snapshots taken from umbrella sampling windows for the orientational configur...
<p>The PMF profiles correspond to the right-handed structure of the dimers in both bilayers. The PMF...
<p>Black, red, and blue lines in each figure refer to PMFs from Im-DPD, Ex-DPD, and AAMD [<a href="h...
To clarify the difference between WT and variants, the values for the E266K, R267H, and P300L were p...
<p>The total simulation time is the sum of the simulation time of the separate MDs. The number in pa...
<p>The curves are shifted so that the maximum points are zero. The distance refers to the distance b...
<p>The grayed region denoted ‘monomer’ is that in which the PMF curves were aligned to free-energy =...
<p>Left panels: side views of Hexamer B and Heptamer B (ribbon representation) with water molecules ...
Analysis of the structures of three (PNP)Pd–Pd(PNP) dimers [where PNP stands for anionic diarylami...
<p>Top: right-handed structure of the NRP1 homodimer and the NRP1-PLXA1 heterodimer. Bottom: left-ha...
<p>The PMF as a function of the intra-peptide distance between the PSI dimer monomers at pH 3.0 (blu...
<p>(a) Mass density and (b) potential of mean force (PMF) profiles in a DOPC/20%Chol bilayer. Thick ...
<p>Complex-1 has the highest affinity, and therefore predicted to be the most stable dimer.</p
<p>The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 Å3.5 Å) (A) and ...
<p>Key interfacing residues depicted on the contact maps (<a href="http://www.plosone.org/article/in...
<p>(<i>A</i>–<i>C</i>) Snapshots taken from umbrella sampling windows for the orientational configur...
<p>The PMF profiles correspond to the right-handed structure of the dimers in both bilayers. The PMF...
<p>Black, red, and blue lines in each figure refer to PMFs from Im-DPD, Ex-DPD, and AAMD [<a href="h...
To clarify the difference between WT and variants, the values for the E266K, R267H, and P300L were p...
<p>The total simulation time is the sum of the simulation time of the separate MDs. The number in pa...
<p>The curves are shifted so that the maximum points are zero. The distance refers to the distance b...
<p>The grayed region denoted ‘monomer’ is that in which the PMF curves were aligned to free-energy =...
<p>Left panels: side views of Hexamer B and Heptamer B (ribbon representation) with water molecules ...
Analysis of the structures of three (PNP)Pd–Pd(PNP) dimers [where PNP stands for anionic diarylami...
<p>Top: right-handed structure of the NRP1 homodimer and the NRP1-PLXA1 heterodimer. Bottom: left-ha...
<p>The PMF as a function of the intra-peptide distance between the PSI dimer monomers at pH 3.0 (blu...
<p>(a) Mass density and (b) potential of mean force (PMF) profiles in a DOPC/20%Chol bilayer. Thick ...
<p>Complex-1 has the highest affinity, and therefore predicted to be the most stable dimer.</p
<p>The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 Å3.5 Å) (A) and ...
<p>Key interfacing residues depicted on the contact maps (<a href="http://www.plosone.org/article/in...
<p>(<i>A</i>–<i>C</i>) Snapshots taken from umbrella sampling windows for the orientational configur...