<p>For all graphs from left to right, first for LaccGluc followed by LaccPost. <b>a.</b> QMEAN distribution and bar graphs. Distribution graphs illustrate QMEAN score tendencies from high-resolution PDB crystallographic structures. Bar graphs help identify “acceptable” or positive scores (blue) from “unacceptable” or negative scores (reed) for each description. <b>b.</b> 3D structure with color gradient from blue to red defining regions with resolutions between 1 and 3.5 Å respectively. The greater blue values represent a more reliable structure. <b>c.</b> Ramachandran plots. We inferred model residues make part of α-helices and β-sheet and beta turns since they occupy permitted spaces. Red points correspond to amino acids different than gl...
<p>(A) Per-residue average backbone RMSF profiles calculated from MD trajectories of the unbound (bl...
<p>The native structure (red) of d1b33n_ (A), d2bl8c1 (B), d2rdeb1 (C) and d1sgka1 (D), the Top1 mod...
<p>Top: Sum of the thresholded maps converted in percentage. Areas of higher percentage (yellow) co...
A crystallographic macromolecular model is typically characterized by a list of quality criteria, su...
Error-scaling model variants in blue. Retention-scaling variants in orange. Bias-scaling variants in...
(A) QMEAN score of the predicted model and local quality estimation of the model, (B) Ramachandran p...
<p>The different color codes indicate most favored (red), generously allowed (dark yellow), addition...
T T0368 (PDB identifier ), the refined CF model (red), and the initial comparative prediction (green...
Ramachandran plots report the distribution of the (ϕ, ψ) torsion angles of the protein backbone and ...
A) Evaluation of the modeling accuracy of QUARK and DeepFold guided by different numbers of spatial ...
<p>Models constructed by <i>e</i>Thread/Modeller and <i>e</i>Thread/TASSER-Lite are compared to crys...
S2 less than 5%, S1 < 30%, S3 < 30% and template RMSD between 3.5 and 5.5 Å are shown here. The dark...
<p>(a) CCR2 and (b) CCR5 models are shown. The different color coding indicates most favored (red), ...
<p>Projection of structures onto the first two PCs obtained using A) 46 structure dataset and B) 71 ...
<p>Class III (“Felsenstein effect”), Class I (attraction due to symplesiomorphies), and Class II (ra...
<p>(A) Per-residue average backbone RMSF profiles calculated from MD trajectories of the unbound (bl...
<p>The native structure (red) of d1b33n_ (A), d2bl8c1 (B), d2rdeb1 (C) and d1sgka1 (D), the Top1 mod...
<p>Top: Sum of the thresholded maps converted in percentage. Areas of higher percentage (yellow) co...
A crystallographic macromolecular model is typically characterized by a list of quality criteria, su...
Error-scaling model variants in blue. Retention-scaling variants in orange. Bias-scaling variants in...
(A) QMEAN score of the predicted model and local quality estimation of the model, (B) Ramachandran p...
<p>The different color codes indicate most favored (red), generously allowed (dark yellow), addition...
T T0368 (PDB identifier ), the refined CF model (red), and the initial comparative prediction (green...
Ramachandran plots report the distribution of the (ϕ, ψ) torsion angles of the protein backbone and ...
A) Evaluation of the modeling accuracy of QUARK and DeepFold guided by different numbers of spatial ...
<p>Models constructed by <i>e</i>Thread/Modeller and <i>e</i>Thread/TASSER-Lite are compared to crys...
S2 less than 5%, S1 < 30%, S3 < 30% and template RMSD between 3.5 and 5.5 Å are shown here. The dark...
<p>(a) CCR2 and (b) CCR5 models are shown. The different color coding indicates most favored (red), ...
<p>Projection of structures onto the first two PCs obtained using A) 46 structure dataset and B) 71 ...
<p>Class III (“Felsenstein effect”), Class I (attraction due to symplesiomorphies), and Class II (ra...
<p>(A) Per-residue average backbone RMSF profiles calculated from MD trajectories of the unbound (bl...
<p>The native structure (red) of d1b33n_ (A), d2bl8c1 (B), d2rdeb1 (C) and d1sgka1 (D), the Top1 mod...
<p>Top: Sum of the thresholded maps converted in percentage. Areas of higher percentage (yellow) co...