<p>Models constructed by <i>e</i>Thread/Modeller and <i>e</i>Thread/TASSER-Lite are compared to crystal structures as well as models built by a simple single-template approach, PSI-BLAST/Nest and a standard version of TASSER-Lite. The quality is assessed by the percentage of residues assigned to different regions of the Ramachandran map by PROCHECK.</p>a<p>According to PROCHECK classification: core – most favored regions, allow – additional allowed regions, gener – generously allowed regions, disall – disallowed regions.</p
When incorporated into a polypeptide chain, proline (Pro) differs from all other naturally occurring...
<p>For each score and benchmark set, the percentage of protein model sets that had significant impro...
The red color region denotes residues of the protein in the most favored regions; the brown color de...
<p>Models are constructed by Modeller and TASSER-Lite using <i>e</i>Thread alignments and compared t...
<p>Three sets of (<b>A</b>) Modeller and (<b>B</b>) TASSER-Lite models are constructed using: struct...
Ramachandran plots report the distribution of the (ϕ, ψ) torsion angles of the protein backbone and ...
Eight protein crystal structures, which have been refined against X-ray diffraction data extending t...
<p>The Ramachandran plot shows phi-psi torsion angles of all residues in the structure. The coloring...
<p><b>Mean differences in Ramachandran plots between natively oriented (blue bars) and mirror models...
Eight protein crystal structures, which have been refined against X-ray diffraction data extending t...
<p>Geometric evaluation of the modeled protein and the template shown as Ramachandran plots for 4KOF...
**<p>Pairwise r.m.s. deviation was calculated among 20 refined structures for the regions (TAZ1): K3...
Unite ́ de Conformation de Standard ranges of atomic and residue volumes are computed in 64 highly r...
<p><sup>a</sup> Values corresponding to the highest resolution shell are shown in parentheses.</p><p...
Eight protein crystal structures, which have been re®ned against X-ray diffraction data extending to...
When incorporated into a polypeptide chain, proline (Pro) differs from all other naturally occurring...
<p>For each score and benchmark set, the percentage of protein model sets that had significant impro...
The red color region denotes residues of the protein in the most favored regions; the brown color de...
<p>Models are constructed by Modeller and TASSER-Lite using <i>e</i>Thread alignments and compared t...
<p>Three sets of (<b>A</b>) Modeller and (<b>B</b>) TASSER-Lite models are constructed using: struct...
Ramachandran plots report the distribution of the (ϕ, ψ) torsion angles of the protein backbone and ...
Eight protein crystal structures, which have been refined against X-ray diffraction data extending t...
<p>The Ramachandran plot shows phi-psi torsion angles of all residues in the structure. The coloring...
<p><b>Mean differences in Ramachandran plots between natively oriented (blue bars) and mirror models...
Eight protein crystal structures, which have been refined against X-ray diffraction data extending t...
<p>Geometric evaluation of the modeled protein and the template shown as Ramachandran plots for 4KOF...
**<p>Pairwise r.m.s. deviation was calculated among 20 refined structures for the regions (TAZ1): K3...
Unite ́ de Conformation de Standard ranges of atomic and residue volumes are computed in 64 highly r...
<p><sup>a</sup> Values corresponding to the highest resolution shell are shown in parentheses.</p><p...
Eight protein crystal structures, which have been re®ned against X-ray diffraction data extending to...
When incorporated into a polypeptide chain, proline (Pro) differs from all other naturally occurring...
<p>For each score and benchmark set, the percentage of protein model sets that had significant impro...
The red color region denotes residues of the protein in the most favored regions; the brown color de...