Barplots of taxa identified as differential abundant in cases and controls at genus level and higher in Cincinnati.

<p>Y-axis was transformed by taking the base ten logarithm of the number of reads plus one. Samples were rarefied to 2000 reads per sample prior to creating the plots. Median number of reads of <i>Pseudomonadales</i> in controls was 0, range was 0 to 1251. Median number of reads of <i>Pseudomonadales</i> in cases was 0, range was 0 to 9. No control samples had reads of <i>Prevotella</i>. Median number of reads of <i>Prevotella</i> in cases was 0, range was 0 to 384. Family <i>Prevotellaceae</i> was also significantly different between cases and controls, it is not shown here because it had a correlation of 1 with genus <i>Prevotella</i>. All other differences identified by LEfSe were at the OTU level. All differences identified by LEfSe in the Birmingham last sample analysis were at the OTU level.