For ANCOM procedure, the clr (centered log ratio) table of ASVs grouped by genera was used, which was transformed to adjust to values from 0 to 1. The W value represents the number of times in which the hypothesis that the abundance of the microbial groups was the same in both infection states was rejected. A positive X axis means that a genus is more abundant in the Fasciola-negative group and a negative value of the X axis means that a genus is more abundant in the Fasciola-positive group. Genera with reject null-hypothesis> 95% were considered significant and are abbreviated as following: Pseudozyma (PSE), Neocallimastix (NEO), Pilobolus (PIL), Apiospora (API), Cyllamyces (CYL), Leptosphaeria (LEP), Buxtonella (BUX), Cystobasidiomycetes_...
<p>Volcano plot depicting the relationship between –log p-values resulting from standard binomial te...
<p>The above plot compares the reads per megabase for the true pathogens in the infected samples and...
Unclassified genera increased in abundance after disruption are listed with their lowest classificat...
For ANCOM procedure, the clr (centered log ratio) table of ASVs grouped by genera was used, which wa...
<p>Differentially abundant genera having a median abundance > 0.1% in at least one group of samples ...
A. Projections of major microbial species contributing to the groups in the ordination plot. Biplot ...
<p>Y-axis was transformed by taking the base ten logarithm of the number of reads plus one. Samples ...
The plots shows the log2-fold changes for genus-level bacterial OTUs that were statistically signifi...
<p>Box plot showing the relative abundance of the bacterial genera shared by all samples, represente...
The bacterial OTUs that could not be assigned to a genus are represented as “Unclassified” and are a...
A box plot presentation of relative abundances of bacterial (A) and fungal (B) phyla. Only phyla wit...
<p>a) Absolute abundance of bacterial species in queen samples subdivided by mating and isolation st...
<p>Red dots represent significant taxa analyzed by Wilcoxon rank sum test (pinworm (+) mebendazole (...
Bacterial families are enumerated along the x-axes, while y-axes display the–log(p-values) for each ...
<p>The heatmap color-coded bar plot depicts the relative abundance of each sample. The relative abun...
<p>Volcano plot depicting the relationship between –log p-values resulting from standard binomial te...
<p>The above plot compares the reads per megabase for the true pathogens in the infected samples and...
Unclassified genera increased in abundance after disruption are listed with their lowest classificat...
For ANCOM procedure, the clr (centered log ratio) table of ASVs grouped by genera was used, which wa...
<p>Differentially abundant genera having a median abundance > 0.1% in at least one group of samples ...
A. Projections of major microbial species contributing to the groups in the ordination plot. Biplot ...
<p>Y-axis was transformed by taking the base ten logarithm of the number of reads plus one. Samples ...
The plots shows the log2-fold changes for genus-level bacterial OTUs that were statistically signifi...
<p>Box plot showing the relative abundance of the bacterial genera shared by all samples, represente...
The bacterial OTUs that could not be assigned to a genus are represented as “Unclassified” and are a...
A box plot presentation of relative abundances of bacterial (A) and fungal (B) phyla. Only phyla wit...
<p>a) Absolute abundance of bacterial species in queen samples subdivided by mating and isolation st...
<p>Red dots represent significant taxa analyzed by Wilcoxon rank sum test (pinworm (+) mebendazole (...
Bacterial families are enumerated along the x-axes, while y-axes display the–log(p-values) for each ...
<p>The heatmap color-coded bar plot depicts the relative abundance of each sample. The relative abun...
<p>Volcano plot depicting the relationship between –log p-values resulting from standard binomial te...
<p>The above plot compares the reads per megabase for the true pathogens in the infected samples and...
Unclassified genera increased in abundance after disruption are listed with their lowest classificat...