<p>Contact map of coevolved residues in OmpR/PhoB family. Axes are residue numbers. Grey spots represent contacts within the same monomer, while black spots are predicted inter-monomeric contacts. The blue spots highlight those coevolved pairs in dimeric interface listed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133389#pone.0133389.t001" target="_blank">Table 1</a>.</p
<p>Red edges connect pairs of residues that are found in contact for at least 70% of the simulation....
<p>Residue pairs whose minimum atomic distances are shorter than 5 Å in a protein structure and coev...
Residues that were not included are colored gray, the others are colored brown (M domain), yellow (A...
<p>Italicized pairs indicate coevolved inter-monomeric contacts of RegX3 but intra-monomeric contact...
<p>(A) Sequence conservation of the α4β5α5 dimeric interface of RegX3, PhoB, TorR and YycF in OmpR/P...
<p>Panels <b>A</b>–<b>C</b> display the structural position of residue pairs listed in the first par...
<p>The network connectivity of coevolving residue pairs is shown by a sequential circular representa...
Intraprotein side chain contacts can couple the evolutionary process of amino acid substitution at o...
<p>TP predicted coevolving pairs are connected with a green dash and the FP ones are shown as red bo...
<p>(A) Ribbon diagram of PMM/PGM from <i>P. aeruginosa</i> (PDB ID 1K2Y) with a semi-transparent sur...
Intraprotein side chain contacts can couple the evolutionary process of amino acid substitution at o...
<p>(A) The residue-based Kullback-Leibler conservation score; (B) The number of coevolving residue i...
Motivation: Predicting residue–residue contacts between interacting proteins is an important problem...
<p>(A) A matrix of <i>rZNMI</i> scores by residue for the PMM/PGM MSA (lower right triangle). Range ...
<p> See Eqs. 24 and 25 for the definitions of and , respectively. The is a threshold for a correla...
<p>Red edges connect pairs of residues that are found in contact for at least 70% of the simulation....
<p>Residue pairs whose minimum atomic distances are shorter than 5 Å in a protein structure and coev...
Residues that were not included are colored gray, the others are colored brown (M domain), yellow (A...
<p>Italicized pairs indicate coevolved inter-monomeric contacts of RegX3 but intra-monomeric contact...
<p>(A) Sequence conservation of the α4β5α5 dimeric interface of RegX3, PhoB, TorR and YycF in OmpR/P...
<p>Panels <b>A</b>–<b>C</b> display the structural position of residue pairs listed in the first par...
<p>The network connectivity of coevolving residue pairs is shown by a sequential circular representa...
Intraprotein side chain contacts can couple the evolutionary process of amino acid substitution at o...
<p>TP predicted coevolving pairs are connected with a green dash and the FP ones are shown as red bo...
<p>(A) Ribbon diagram of PMM/PGM from <i>P. aeruginosa</i> (PDB ID 1K2Y) with a semi-transparent sur...
Intraprotein side chain contacts can couple the evolutionary process of amino acid substitution at o...
<p>(A) The residue-based Kullback-Leibler conservation score; (B) The number of coevolving residue i...
Motivation: Predicting residue–residue contacts between interacting proteins is an important problem...
<p>(A) A matrix of <i>rZNMI</i> scores by residue for the PMM/PGM MSA (lower right triangle). Range ...
<p> See Eqs. 24 and 25 for the definitions of and , respectively. The is a threshold for a correla...
<p>Red edges connect pairs of residues that are found in contact for at least 70% of the simulation....
<p>Residue pairs whose minimum atomic distances are shorter than 5 Å in a protein structure and coev...
Residues that were not included are colored gray, the others are colored brown (M domain), yellow (A...