Additional file 23: Figure S13. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
- Matteo Dell’Acqua (3552404)
- Daniel Gatti (3575003)
- Giorgio Pea (529834)
- Federica Cattonaro (158236)
- Frederik Coppens (3191250)
- Gabriele Magris (3574997)
- Aye Hlaing (3574991)
- Htay Aung (3575000)
- Hilde Nelissen (3191247)
- Joke Baute (3552395)
- Elisabetta Frascaroli (3574994)
- Gary Churchill (283616)
- Dirk Inzé (254742)
- Michele Morgante (83623)
- Mario Pè (3552401)
DOIAbstract
Linkage disequilibrium within the flowering time QTL confidence interval. Panel a shows the heat map considering all imputed SNPs in the region. From white to red, increasing LD. Along the diagonal, SNP marker index, not proportional to physical position (noted on edges). ZCN8 position is marked with an asterisk. The haplotype of highest significance is framed in blue. Panel b shows mean LD in a sliding window. On the x axis, physical position on the genome. The red box marks the haplotype of highest significance according to the association approach. LD is generally low in the QTL region, but a few distinctive peaks are visible: the most central to the QTL interval is short upstream ZCN8 (position marked with *), which lacks imputed SNPs. ...
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