Detail of the local LD decay distribution along each chromosome. The 25th percentile (blue line) and 75th percentile (red line) of the LD distribution within ±1 Mb each marker is shown. Centromere positions are marked with black triangles. The r2 quantiles for each marker-based window are averaged in sliding windows of 100 markers in size. Some deviations between the general shape of the two distributions are evident, notably in Chr 2 and Chr 6. (PDF 12383 kb
Distribution of heterozygous markers in the MM population genomes. Panel a shows average heterozygos...
Structure in the MM population. A principal components (PC) analysis on MM founders genotypes is sho...
Quantitative data for MM founders’ sequencing and expression. For sequencing, raw reads count and me...
Linkage disequilibrium within the flowering time QTL confidence interval. Panel a shows the heat map...
Distribution of phenotypic estimated values across the MM lines. Frequency classes of MM lines are c...
Genomic composition of the MM population. Panel a shows the distribution of the number of recombinat...
Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...
QTL scan for grain yield. In panel a, the full model scan. On the x axis, the physical position from...
QTL scan for days to pollen shed. In panel a, the full model scan. On the x axis, the physical posit...
Average power of the MAGIC maize population as a function of the number of lines analyzed. Plot desi...
Suggestive loci (P <0.63) for days to pollen shed (PS), ear height (EH), plant height (PH), and grai...
Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...
QTL scan for ear height. In panel a, the full model scan. On the x axis, the physical position from ...
Mean, range, genotypic variance (σ 2 g ), genotype × environment interaction variance (σ 2 ge ), res...
Summary of power simulation results with varying sample sizes (100, 200, 300, 400, 500). For each si...
Distribution of heterozygous markers in the MM population genomes. Panel a shows average heterozygos...
Structure in the MM population. A principal components (PC) analysis on MM founders genotypes is sho...
Quantitative data for MM founders’ sequencing and expression. For sequencing, raw reads count and me...
Linkage disequilibrium within the flowering time QTL confidence interval. Panel a shows the heat map...
Distribution of phenotypic estimated values across the MM lines. Frequency classes of MM lines are c...
Genomic composition of the MM population. Panel a shows the distribution of the number of recombinat...
Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...
QTL scan for grain yield. In panel a, the full model scan. On the x axis, the physical position from...
QTL scan for days to pollen shed. In panel a, the full model scan. On the x axis, the physical posit...
Average power of the MAGIC maize population as a function of the number of lines analyzed. Plot desi...
Suggestive loci (P <0.63) for days to pollen shed (PS), ear height (EH), plant height (PH), and grai...
Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...
QTL scan for ear height. In panel a, the full model scan. On the x axis, the physical position from ...
Mean, range, genotypic variance (σ 2 g ), genotype × environment interaction variance (σ 2 ge ), res...
Summary of power simulation results with varying sample sizes (100, 200, 300, 400, 500). For each si...
Distribution of heterozygous markers in the MM population genomes. Panel a shows average heterozygos...
Structure in the MM population. A principal components (PC) analysis on MM founders genotypes is sho...
Quantitative data for MM founders’ sequencing and expression. For sequencing, raw reads count and me...