Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 6: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Heat map of the integrated maps. Markers of each row and column are ranked according to the map orde...

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing 1,525 SNP markers and their locations on the genetic maps of the 16 walnut...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Numbers and percentages of walnut cdBES collinear with genes in the grape and poplar pseudomolecules...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 1: Table S1. of Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Natasha Glover (3556601)
Josquin Daron (3434801)
Lise Pingault (3556598)
Klaas Vandepoele (23662)
Etienne Paux (488462)
Catherine Feuillet (129103)
FrĂŠdĂŠric Choulet (3539051)

September 2015

Comparison of wheat filtered gene set to Arabidopsis gene set. Table S2. Genes reclassified from non...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Supplemental Material for Chen et al., 2019

Xilong Chen (5882264)
Shiming Li (6108398)
Dong Zhang (73558)
Mingyu Han (6108405)
Xin Jin (6108407)
Caipin Zhao (6108409)
Songbo Wang (6108412)
Libo Xing (6108414)
Juanjuan Ma (6108416)
Na An (6108417)

May 2019

Supplemental figures and tables of article "Sequencing of a wild apple (Malus baccata) genome unrave...

Additional file 3: Table S3. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

Andrew Heidel (3474860)
Christiane Kiefer (165100)
George Coupland (110848)
Laura Rose (749727)

November 2016

Provides Genbank accession numbers for A. alpina genes and Phytozome V9 identifiers for A. lyrata ge...

Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 6: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Heat map of the integrated maps. Markers of each row and column are ranked according to the map orde...

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing 1,525 SNP markers and their locations on the genetic maps of the 16 walnut...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Numbers and percentages of walnut cdBES collinear with genes in the grape and poplar pseudomolecules...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 1: Table S1. of Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Natasha Glover (3556601)
Josquin Daron (3434801)
Lise Pingault (3556598)
Klaas Vandepoele (23662)
Etienne Paux (488462)
Catherine Feuillet (129103)
FrĂŠdĂŠric Choulet (3539051)

September 2015

Comparison of wheat filtered gene set to Arabidopsis gene set. Table S2. Genes reclassified from non...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Supplemental Material for Chen et al., 2019

Xilong Chen (5882264)
Shiming Li (6108398)
Dong Zhang (73558)
Mingyu Han (6108405)
Xin Jin (6108407)
Caipin Zhao (6108409)
Songbo Wang (6108412)
Libo Xing (6108414)
Juanjuan Ma (6108416)
Na An (6108417)

May 2019

Supplemental figures and tables of article "Sequencing of a wild apple (Malus baccata) genome unrave...

Additional file 3: Table S3. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

Andrew Heidel (3474860)
Christiane Kiefer (165100)
George Coupland (110848)
Laura Rose (749727)

November 2016

Provides Genbank accession numbers for A. alpina genes and Phytozome V9 identifiers for A. lyrata ge...

Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 6: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Heat map of the integrated maps. Markers of each row and column are ranked according to the map orde...

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

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