Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX...

Additional file 8 of Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

Nan Lu (178803)
Fang Mei (405563)
Zhi Wang (193655)
Nan Wang (21935)
Yao Xiao (227567)
Lisheng Kong (4014758)
Guanzheng Qu (5776307)
Wenjun Ma (151952)
Junhui Wang (217439)

November 2018

Figure S4. An unrooted phylogenetic tree of SUS members from Arabidopsis thaliana, Populus trichocar...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing 1,525 SNP markers and their locations on the genetic maps of the 16 walnut...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing all 1,031 BAC contigs including the nested BAC contigs that were removed f...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Summary of genetic statistics for 12 SSR loci in the 36 genotypes analyzed. (DOC 44âkb

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 1: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Detailed information of 18 walnut genotypes with short juvenile period and 18 walnut genotypes with ...

Additional file 4: of Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine

Christine Böttcher (321819)
Crista Burbidge (3414122)
Paul Boss (3414119)
Christopher Davies (67862)

September 2015

Phylogenetic relationship of RR coding sequences from grapevine and Arabidopsis. The unrooted tree w...

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX...

Additional file 8 of Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

Nan Lu (178803)
Fang Mei (405563)
Zhi Wang (193655)
Nan Wang (21935)
Yao Xiao (227567)
Lisheng Kong (4014758)
Guanzheng Qu (5776307)
Wenjun Ma (151952)
Junhui Wang (217439)

November 2018

Figure S4. An unrooted phylogenetic tree of SUS members from Arabidopsis thaliana, Populus trichocar...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing 1,525 SNP markers and their locations on the genetic maps of the 16 walnut...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing all 1,031 BAC contigs including the nested BAC contigs that were removed f...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Summary of genetic statistics for 12 SSR loci in the 36 genotypes analyzed. (DOC 44âkb

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 1: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Detailed information of 18 walnut genotypes with short juvenile period and 18 walnut genotypes with ...

Additional file 4: of Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine

Christine Böttcher (321819)
Crista Burbidge (3414122)
Paul Boss (3414119)
Christopher Davies (67862)

September 2015

Phylogenetic relationship of RR coding sequences from grapevine and Arabidopsis. The unrooted tree w...

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX...

Additional file 8 of Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

Nan Lu (178803)
Fang Mei (405563)
Zhi Wang (193655)
Nan Wang (21935)
Yao Xiao (227567)
Lisheng Kong (4014758)
Guanzheng Qu (5776307)
Wenjun Ma (151952)
Junhui Wang (217439)

November 2018

Figure S4. An unrooted phylogenetic tree of SUS members from Arabidopsis thaliana, Populus trichocar...

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

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