Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Additional file 5: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Haplotype map of the integrated maps. Each row represents a marker. Markers are ranked in accordance...

Additional file 7: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Relative resistance index of walnut individuals. Statistics of data concerning the relative resistan...

Additional file 2: of The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons

Janka Puterova (4864483)
Zdenek Kubat (103153)
Eduard Kejnovsky (4864489)
Wojciech Jesionek (4864486)
Jana Cizkova (4864492)
Boris Vyskot (57371)
Roman Hobza (103151)

February 2018

Title: Information about analyzed data. Table S1 Geographical locations of wild S. latifolia populat...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Numbers and percentages of walnut cdBES collinear with genes in the grape and poplar pseudomolecules...

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing all 1,031 BAC contigs including the nested BAC contigs that were removed f...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Summary of genetic statistics for 12 SSR loci in the 36 genotypes analyzed. (DOC 44âkb

Additional file 5: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Haplotype map of the integrated maps. Each row represents a marker. Markers are ranked in accordance...

Additional file 7: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Relative resistance index of walnut individuals. Statistics of data concerning the relative resistan...

Additional file 2: of The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons

Janka Puterova (4864483)
Zdenek Kubat (103153)
Eduard Kejnovsky (4864489)
Wojciech Jesionek (4864486)
Jana Cizkova (4864492)
Boris Vyskot (57371)
Roman Hobza (103151)

February 2018

Title: Information about analyzed data. Table S1 Geographical locations of wild S. latifolia populat...

Additional file 8: Table S6. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Characteristics and locations of gaps larger than 8Â cM in the 16 walnut linkage groups. (DOCX 16.2 ...

Additional file 6: Table S4. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Numbers and percentages of walnut cdBES collinear with genes in the grape and poplar pseudomolecules...

Additional file 3: Table S2. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel spreadsheet listing all 1,031 BAC contigs including the nested BAC contigs that were removed f...

Additional file 4: Table S3. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Ming-Cheng Luo (3474905)
Frank You (3417020)
Pingchuan Li (85870)
Ji-Rui Wang (90914)
Tingting Zhu (334564)
Abhaya Dandekar (3474899)
Charles Leslie (3474896)
Mallikarjuna Aradhya (3252891)
Patrick McGuire (3474902)
Jan Dvorak (93704)

September 2015

Excel file listing the locations of 15,203 cdBES on the physical map, their annotation, and synteny ...

Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo, Ming-Cheng
You, Frank M
Li, Pingchuan
Wang, Ji-Rui
Zhu, Tingting
Dandekar, Abhaya M
Leslie, Charles A
Aradhya, Mallikarjuna
McGuire, Patrick E
Dvorak, Jan

September 2015

BackgroundMutations often accompany DNA replication. Since there may be fewer cell cycles per year i...

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb

Additional file 2: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Dot plots comparing each chestnut LG to the set of Populus trichocarpa chromosomes with highlightnig...

Additional file 5: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Genetic map markers defining the QTL region and corresponding physical map contigs. (XLSX 40 kb

Additional file 2: of Precocious genotypes and homozygous tendency generated by self-pollination in walnut

Lingna Chen (6039236)
Runquan Dong (6039239)
Qingguo Ma (667532)
Yu Zhang (12946)
Shizhong Xu (129928)
Delu Ning (6039242)
Qin Chen (44010)
Dong Pei (480615)

December 2018

Summary of genetic statistics for 12 SSR loci in the 36 genotypes analyzed. (DOC 44âkb

Additional file 5: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Haplotype map of the integrated maps. Each row represents a marker. Markers are ranked in accordance...

Additional file 7: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Relative resistance index of walnut individuals. Statistics of data concerning the relative resistan...

Additional file 2: of The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons

Janka Puterova (4864483)
Zdenek Kubat (103153)
Eduard Kejnovsky (4864489)
Wojciech Jesionek (4864486)
Jana Cizkova (4864492)
Boris Vyskot (57371)
Roman Hobza (103151)

February 2018

Title: Information about analyzed data. Table S1 Geographical locations of wild S. latifolia populat...

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

Additional file 1: Table S1. of Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Abstract

Extracted data

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