R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs to known TSS. Takes GENCODE annotations in .csv format and Additional file 1 as input. (R 7 kb
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
R script used to generate figures, tables and numbers used in the described analysis of Hi-C data. (...
R code for PQS abundance analysis in BS and WS differentially-expressed genes. Program written in R ...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
R code for PQS feature analysis in BS and WS via ANOVA. Program written in R that analyses promoter-...
R code for PQS motif analysis in BS and WS differentially-expressed genes via SOM method. Program wr...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
Supplemental Figures S1 to S3 and Tables S1 to S7 with corresponding legends. (PDF 677 kb
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
R script used to generate figures, tables and numbers used in the described analysis of Hi-C data. (...
R code for PQS abundance analysis in BS and WS differentially-expressed genes. Program written in R ...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
R code for PQS feature analysis in BS and WS via ANOVA. Program written in R that analyses promoter-...
R code for PQS motif analysis in BS and WS differentially-expressed genes via SOM method. Program wr...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
Supplemental Figures S1 to S3 and Tables S1 to S7 with corresponding legends. (PDF 677 kb
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
R script used to generate figures, tables and numbers used in the described analysis of Hi-C data. (...
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