R code for PQS motif analysis in BS and WS differentially-expressed genes via SOM method. Program written in R for conducting self-organizing map classification of PQS motifs and analyzing enrichment of certain types of motifs in genes differentially expressed in BS and WS. (R 11 kb
Figure S5. Gene set enrichment analysis of co-expressed genes with VQs. (PDF 128Â kb
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
R code for PQS abundance analysis in BS and WS differentially-expressed genes. Program written in R ...
R code for PQS feature analysis in BS and WS via ANOVA. Program written in R that analyses promoter-...
R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs ...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
Supplemental Figures S1 to S3 and Tables S1 to S7 with corresponding legends. (PDF 677 kb
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
Figure S5. Gene set enrichment analysis of co-expressed genes with VQs. (PDF 128Â kb
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
R code for PQS abundance analysis in BS and WS differentially-expressed genes. Program written in R ...
R code for PQS feature analysis in BS and WS via ANOVA. Program written in R that analyses promoter-...
R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs ...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
Supplemental Figures S1 to S3 and Tables S1 to S7 with corresponding legends. (PDF 677 kb
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
Figure S5. Gene set enrichment analysis of co-expressed genes with VQs. (PDF 128Â kb
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
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