H1-hESC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigenetic modeling of gene expression analysis. Each row corresponds to a TSS and contains information on positions of PQS within 2 kbp of the TSS as well as âbestbinâ epigenomic track signals for DNase hypersensitivity and histone modifications. This file is an output of Additional file 11 and is taken as input by Additional file 19. (CSV 6250 kb
R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs ...
Additional figures and data. Figures S1, S2, S3, S4 and S5. Epigenome classifications for the three ...
Data S1. Recombinant HsMar1 insertion sites in HeLa and CHO cell lines. Data S2. Inter-plasmidic act...
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
Additional file 1: Fig. S1. Model reproducibility and state similarity as a function of hyperparamet...
Gene expression clusters of WT, ∆kmt1/∆dim-5 and ∆kmt2/∆set-1. Gene expression patterns were cluster...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
Human Epigenetic Chromatin Modification Enzymes and Epigenetic Chromatin Remodeling Factors RT2 Prof...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs ...
Additional figures and data. Figures S1, S2, S3, S4 and S5. Epigenome classifications for the three ...
Data S1. Recombinant HsMar1 insertion sites in HeLa and CHO cell lines. Data S2. Inter-plasmidic act...
GM12878 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigene...
HUVEC epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
HepG2 epigenetic modeling of gene expression dataset. Expression modeling dataset used for epigeneti...
R code for extracting DNAse 1 genomic track signal near TSS for epigenetic modeling of gene expressi...
R code for mapping PQS to TSS for epigenetic modeling of gene expression method. Program written in ...
R code for implementing epigenetic modeling of gene expression and analyzing PQS transcriptional eff...
R code for CAGE data processing for epigenetic modeling of gene expression method. Program written i...
Additional file 1: Fig. S1. Model reproducibility and state similarity as a function of hyperparamet...
Gene expression clusters of WT, ∆kmt1/∆dim-5 and ∆kmt2/∆set-1. Gene expression patterns were cluster...
Mapped coordinates of all PQS within 2 kbp of known TSS. Genomic coordinates and gene localization o...
Human Epigenetic Chromatin Modification Enzymes and Epigenetic Chromatin Remodeling Factors RT2 Prof...
Genomic coordinates and motif features for all PQS. Reference coordinates from GRCh37 calculated usi...
R code used for mapping genomic PQS to known TSS. Program written in R, used for mapping PQS motifs ...
Additional figures and data. Figures S1, S2, S3, S4 and S5. Epigenome classifications for the three ...
Data S1. Recombinant HsMar1 insertion sites in HeLa and CHO cell lines. Data S2. Inter-plasmidic act...