MOESM5 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

MOESM7 of Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes

Androniki Psifidi (357421)
Georgios Banos (357423)
Oswald Matika (561285)
Takele Desta (3515810)
Judy Bettridge (701049)
David Hume (3460133)
Tadelle Dessie (3546146)
Rob Christley (701051)
Paul Wigley (70792)
Olivier Hanotte (89422)
Pete Kaiser (242472)

September 2016

Additional file 7: Figures S4 and S5. Pathway analysis results using the IPA software for the Jarso ...

Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

Jingwei Yuan
Sirui Chen
Fengying Shi
Guiqin Wu
Aiqiao Liu
Ning Yang
Congjiao Sun

September 2017

Abstract Background Efficient use of feed resources for farm animals is a critical concern in animal...

MOESM3 of A survey of functional genomic variation in domesticated chickens

Martijn Derks (3289113)
Hendrik-Jan Megens (116285)
Mirte Bosse (116283)
Jeroen Visscher (3583910)
Katrijn Peeters (3316947)
Marco Bink (3578189)
Addie Vereijken (42571)
Christian Gross (429429)
Dick Ridder (5107142)
Marcel Reinders (66822)
Martien Groenen (3191614)

April 2018

Additional file 3: Table S1. Haplotypes exhibiting missing or depleted homozygosity in the WA line. ...

MOESM4 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 4: Figure S2. Haplotype blocks on GGA7 for feed conversion ratio. Linkage disequilib...

MOESM3 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 3: Table S2. Detailed information on SNPs associated with feed intake and efficiency...

MOESM2 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 2: Figure S1. Manhattan and Q–Q plots obtained from conditional GWAS analysis for da...

MOESM1 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 1: Table S1. Multivariate linear model for the calculation of RFI in two laying peri...

Additional file 3: Figure S2. of Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

Jingwei Yuan (791540)
Sirui Chen (192925)
Fengying Shi (760044)
Guiqin Wu (760045)
Aiqiao Liu (760046)
Ning Yang (114965)
Congjiao Sun (617470)

September 2017

Regional association plot for FCR after conditional analysis on rs13553102. The graph plots genomic ...

Additional file 1: Table S1. of Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens

Guoqiang Yi (489551)
Manman Shen (3151977)
Jingwei Yuan (791540)
Congjiao Sun (617470)
Zhongyi Duan (760043)
Liang Qu (651440)
Taocun Dou (817624)
Meng Ma (2075878)
Jian Lu (51707)
Jun Guo (85069)
Sirui Chen (192925)
Lujiang Qu (114956)
Kehua Wang (535422)
Ning Yang (114965)

October 2015

Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...

Genome wide association study of body weight and feed efficiency traits in a commercial broiler chicken population, a re-visitation

Mebratie, Wossenie
Reyer, Henry
Wimmers, Klaus
Bovenhuis, Henk
Jensen, Just

January 2019

Genome wide association study was conducted using a mixed linear model (MLM) approach that accounted...

MOESM1 of Genetic parameters and signatures of selection in two divergent laying hen lines selected for feather pecking behaviour

Vanessa Grams (3565553)
Robin Wellmann (3565550)
Siegfried Preuß (3565562)
Michael Grashorn (3565556)
Jörgen Kjaer (3565565)
Werner Bessei (3565559)
Jörn Bennewitz (3565547)

September 2015

Additional file 1: Table S1. . SNPs with a genome-wide significance level pgenome wide < 0.05 and th...

Additional file 6: of A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

Gabriel Moreira (4799577)
Clarissa Boschiero (4799571)
Aline Cesar (3508628)
James Reecy (3561878)
Thaís Godoy (4799562)
Priscila Trevisoli (5245721)
Maurício Cantão (5245718)
Mônica Ledur (4799565)
Adriana Ibelli (5245727)
Jane de Oliveira Peixoto (790338)
Ana Moura (5245724)
Dorian Garrick (3572441)
Luiz Coutinho (3508640)

May 2018

Manhattan plot of the SNP effect distribution within each significant window for abdominal fat perce...

Additional file 1: of Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Andrei Kudinov (6557384)
Natalia Dementieva (6557387)
Olga Mitrofanova (6557390)
Olga Stanishevskaya (6557393)
Elena Fedorova (465219)
Tatiana Larkina (6557402)
Arina Mishina (6557405)
Kirill Plemyashov (5012900)
Darren Griffin (5825045)
Michael Romanov (6557408)

April 2019

Table S1. Basic information for SNP markers per chromosome after quality control. (DOCX 29 kb

Additional file 3: Figure S2. of Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Hui Zhang (7197)
Jia-Qiang Yu (4608982)
Li-Li Yang (3149031)
Luke Kramer (4608985)
Xin-Yang Zhang (4608988)
Wei Na (2618470)
James Reecy (3561878)
Hui Li (32376)

November 2017

The phenotypic distributions of the four different genotype classes for the most significant AA effe...

MOESM5 of A survey of functional genomic variation in domesticated chickens

Martijn Derks (3289113)
Hendrik-Jan Megens (116285)
Mirte Bosse (116283)
Jeroen Visscher (3583910)
Katrijn Peeters (3316947)
Marco Bink (3578189)
Addie Vereijken (42571)
Christian Gross (429429)
Dick Ridder (5107142)
Marcel Reinders (66822)
Martien Groenen (3191614)

April 2018

Additional file 5: Table S1. Evolutionary-intolerant fixed variants (AF > 90%). Table S2. DAVID gene...

MOESM7 of Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes

Androniki Psifidi (357421)
Georgios Banos (357423)
Oswald Matika (561285)
Takele Desta (3515810)
Judy Bettridge (701049)
David Hume (3460133)
Tadelle Dessie (3546146)
Rob Christley (701051)
Paul Wigley (70792)
Olivier Hanotte (89422)
Pete Kaiser (242472)

September 2016

Additional file 7: Figures S4 and S5. Pathway analysis results using the IPA software for the Jarso ...

Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

Jingwei Yuan
Sirui Chen
Fengying Shi
Guiqin Wu
Aiqiao Liu
Ning Yang
Congjiao Sun

September 2017

Abstract Background Efficient use of feed resources for farm animals is a critical concern in animal...

MOESM3 of A survey of functional genomic variation in domesticated chickens

Martijn Derks (3289113)
Hendrik-Jan Megens (116285)
Mirte Bosse (116283)
Jeroen Visscher (3583910)
Katrijn Peeters (3316947)
Marco Bink (3578189)
Addie Vereijken (42571)
Christian Gross (429429)
Dick Ridder (5107142)
Marcel Reinders (66822)
Martien Groenen (3191614)

April 2018

Additional file 3: Table S1. Haplotypes exhibiting missing or depleted homozygosity in the WA line. ...

MOESM4 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 4: Figure S2. Haplotype blocks on GGA7 for feed conversion ratio. Linkage disequilib...

MOESM3 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 3: Table S2. Detailed information on SNPs associated with feed intake and efficiency...

MOESM2 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 2: Figure S1. Manhattan and Q–Q plots obtained from conditional GWAS analysis for da...

MOESM1 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Jingwei Yuan (791540)
Kehua Wang (535422)
Guoqiang Yi (489551)
Meng Ma (2075878)
Taocun Dou (817624)
Congjiao Sun (617470)
Lu-Jiang Qu (3568658)
Manman Shen (3151977)
Liang Qu (651440)
Ning Yang (114965)

October 2015

Additional file 1: Table S1. Multivariate linear model for the calculation of RFI in two laying peri...

Additional file 3: Figure S2. of Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

Jingwei Yuan (791540)
Sirui Chen (192925)
Fengying Shi (760044)
Guiqin Wu (760045)
Aiqiao Liu (760046)
Ning Yang (114965)
Congjiao Sun (617470)

September 2017

Regional association plot for FCR after conditional analysis on rs13553102. The graph plots genomic ...

Additional file 1: Table S1. of Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens

Guoqiang Yi (489551)
Manman Shen (3151977)
Jingwei Yuan (791540)
Congjiao Sun (617470)
Zhongyi Duan (760043)
Liang Qu (651440)
Taocun Dou (817624)
Meng Ma (2075878)
Jian Lu (51707)
Jun Guo (85069)
Sirui Chen (192925)
Lujiang Qu (114956)
Kehua Wang (535422)
Ning Yang (114965)

October 2015

Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...

Genome wide association study of body weight and feed efficiency traits in a commercial broiler chicken population, a re-visitation

Mebratie, Wossenie
Reyer, Henry
Wimmers, Klaus
Bovenhuis, Henk
Jensen, Just

January 2019

Genome wide association study was conducted using a mixed linear model (MLM) approach that accounted...

MOESM1 of Genetic parameters and signatures of selection in two divergent laying hen lines selected for feather pecking behaviour

Vanessa Grams (3565553)
Robin Wellmann (3565550)
Siegfried Preuß (3565562)
Michael Grashorn (3565556)
Jörgen Kjaer (3565565)
Werner Bessei (3565559)
Jörn Bennewitz (3565547)

September 2015

Additional file 1: Table S1. . SNPs with a genome-wide significance level pgenome wide < 0.05 and th...

Additional file 6: of A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

Gabriel Moreira (4799577)
Clarissa Boschiero (4799571)
Aline Cesar (3508628)
James Reecy (3561878)
Thaís Godoy (4799562)
Priscila Trevisoli (5245721)
Maurício Cantão (5245718)
Mônica Ledur (4799565)
Adriana Ibelli (5245727)
Jane de Oliveira Peixoto (790338)
Ana Moura (5245724)
Dorian Garrick (3572441)
Luiz Coutinho (3508640)

May 2018

Manhattan plot of the SNP effect distribution within each significant window for abdominal fat perce...

Additional file 1: of Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Andrei Kudinov (6557384)
Natalia Dementieva (6557387)
Olga Mitrofanova (6557390)
Olga Stanishevskaya (6557393)
Elena Fedorova (465219)
Tatiana Larkina (6557402)
Arina Mishina (6557405)
Kirill Plemyashov (5012900)
Darren Griffin (5825045)
Michael Romanov (6557408)

April 2019

Table S1. Basic information for SNP markers per chromosome after quality control. (DOCX 29 kb

Additional file 3: Figure S2. of Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Hui Zhang (7197)
Jia-Qiang Yu (4608982)
Li-Li Yang (3149031)
Luke Kramer (4608985)
Xin-Yang Zhang (4608988)
Wei Na (2618470)
James Reecy (3561878)
Hui Li (32376)

November 2017

The phenotypic distributions of the four different genotype classes for the most significant AA effe...

MOESM5 of A survey of functional genomic variation in domesticated chickens

Martijn Derks (3289113)
Hendrik-Jan Megens (116285)
Mirte Bosse (116283)
Jeroen Visscher (3583910)
Katrijn Peeters (3316947)
Marco Bink (3578189)
Addie Vereijken (42571)
Christian Gross (429429)
Dick Ridder (5107142)
Marcel Reinders (66822)
Martien Groenen (3191614)

April 2018

Additional file 5: Table S1. Evolutionary-intolerant fixed variants (AF > 90%). Table S2. DAVID gene...

MOESM7 of Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes

Androniki Psifidi (357421)
Georgios Banos (357423)
Oswald Matika (561285)
Takele Desta (3515810)
Judy Bettridge (701049)
David Hume (3460133)
Tadelle Dessie (3546146)
Rob Christley (701051)
Paul Wigley (70792)
Olivier Hanotte (89422)
Pete Kaiser (242472)

September 2016

Additional file 7: Figures S4 and S5. Pathway analysis results using the IPA software for the Jarso ...

Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

Jingwei Yuan
Sirui Chen
Fengying Shi
Guiqin Wu
Aiqiao Liu
Ning Yang
Congjiao Sun

September 2017

Abstract Background Efficient use of feed resources for farm animals is a critical concern in animal...

MOESM3 of A survey of functional genomic variation in domesticated chickens

Martijn Derks (3289113)
Hendrik-Jan Megens (116285)
Mirte Bosse (116283)
Jeroen Visscher (3583910)
Katrijn Peeters (3316947)
Marco Bink (3578189)
Addie Vereijken (42571)
Christian Gross (429429)
Dick Ridder (5107142)
Marcel Reinders (66822)
Martien Groenen (3191614)

April 2018

Additional file 3: Table S1. Haplotypes exhibiting missing or depleted homozygosity in the WA line. ...

MOESM5 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Abstract

Extracted data

MOESM5 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

Abstract

Extracted data

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