p -values of model comparison. The tables show p-values of Wilcoxon signed ranked tests comparing the different models, one for each group of data sets. (PDF 26.3 kb
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively ac...
Supplementary Materials. Figure S1. The reproducibility of ChIP-seq peak shifts in a HeLa cell exper...
Average JSD values. The plot shows the JSD values of the de-mixing experiment for all 36 data sets t...
Table S3. Scores for the motif optimization algorithms on ChIP-seq data with small training sets. (D...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
Comparative distribution of p-values for ChIP-seq peaks called by FindPeaks and MACS of data from th...
Comparison of the distribution of FindPeaks called ChIP-seq peaks across a model gene using data fro...
Figure S1. Read count correlations of all K562 datasets and comparison of K562 ATAC-seq datasets gen...
Relation between the p-values of colocalization analysis for a collection of genomic tracks and the ...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
Detailed analysis of predictions against experimental data for Approaches 1 and 3 for all 16 GNN tri...
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
(A) Indirect binding and cooperative binding between TFs A and B are simulated as described in Metho...
Additional file 6: Table S5. This Excel sheet presents a comparative table of Pearsonâs correlatio...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively ac...
Supplementary Materials. Figure S1. The reproducibility of ChIP-seq peak shifts in a HeLa cell exper...
Average JSD values. The plot shows the JSD values of the de-mixing experiment for all 36 data sets t...
Table S3. Scores for the motif optimization algorithms on ChIP-seq data with small training sets. (D...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
Comparative distribution of p-values for ChIP-seq peaks called by FindPeaks and MACS of data from th...
Comparison of the distribution of FindPeaks called ChIP-seq peaks across a model gene using data fro...
Figure S1. Read count correlations of all K562 datasets and comparison of K562 ATAC-seq datasets gen...
Relation between the p-values of colocalization analysis for a collection of genomic tracks and the ...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
Detailed analysis of predictions against experimental data for Approaches 1 and 3 for all 16 GNN tri...
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
(A) Indirect binding and cooperative binding between TFs A and B are simulated as described in Metho...
Additional file 6: Table S5. This Excel sheet presents a comparative table of Pearsonâs correlatio...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively ac...
Supplementary Materials. Figure S1. The reproducibility of ChIP-seq peak shifts in a HeLa cell exper...
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