<p>(A) The PMFs as a function of the distance between the pairs shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0144058#pone.0144058.t001" target="_blank">Table 1</a>. (B) Illustration of the pairs. The spheres in blue and red represent the C<sub>α</sub> atoms of the BC-CT and B-chain α-helix residues, respectively.</p
<p>a). Two models (c1.2, left and c1.1, right) for the plexin-C1 TM-JM dimer connected by helical se...
a) and b) Atom-positional RMSD (Å) from the starting structures as observed during the two represent...
<p>A) Variation of the atomic distance d(R/H681, CA - H679’, O) as a characteristic proximal inter-s...
<p>The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 Å3.5 Å) (A) and ...
<p>(A) The RMSF values of the Cα atoms in Ets1. (B) The RMSF values of the phosphorus atoms in DNA. ...
<p>Black, red, and blue lines in each figure refer to PMFs from Im-DPD, Ex-DPD, and AAMD [<a href="h...
<p>The PMFs correspond to the separation of the monomers associated in right-handed interactions (R)...
<p>The distances of all four simulations of pose A or pose B of system PDH-SUG were used. Left panel...
<p>(a) As for <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002509#pcb...
<p>The LmrA residue pairs used in this cross-linking study are identified in the first column; pairs...
<p>(A), the frequency distribution of the backbone nitrogen atoms of Met908 and Met909 to Glu723 sid...
<p>The RDF is the distance distribution of two groups of atoms, calculated from the last 100 ns traj...
<p>Cut-off value is shortest inter-protomer contact distance less than 4.8 Å between any atoms, for ...
<p>A-B) MHC-II-P<sub>7w</sub> complex. C-D) MHC-II-P<sub>7m</sub>. E-F) MHC-II-P<sub>22w</sub> and G...
<p>The ensemble-based pMI profiles of the BR AF complexes with PLX4720 (A), Dabrafenib (B), Vemurafe...
<p>a). Two models (c1.2, left and c1.1, right) for the plexin-C1 TM-JM dimer connected by helical se...
a) and b) Atom-positional RMSD (Å) from the starting structures as observed during the two represent...
<p>A) Variation of the atomic distance d(R/H681, CA - H679’, O) as a characteristic proximal inter-s...
<p>The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 Å3.5 Å) (A) and ...
<p>(A) The RMSF values of the Cα atoms in Ets1. (B) The RMSF values of the phosphorus atoms in DNA. ...
<p>Black, red, and blue lines in each figure refer to PMFs from Im-DPD, Ex-DPD, and AAMD [<a href="h...
<p>The PMFs correspond to the separation of the monomers associated in right-handed interactions (R)...
<p>The distances of all four simulations of pose A or pose B of system PDH-SUG were used. Left panel...
<p>(a) As for <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002509#pcb...
<p>The LmrA residue pairs used in this cross-linking study are identified in the first column; pairs...
<p>(A), the frequency distribution of the backbone nitrogen atoms of Met908 and Met909 to Glu723 sid...
<p>The RDF is the distance distribution of two groups of atoms, calculated from the last 100 ns traj...
<p>Cut-off value is shortest inter-protomer contact distance less than 4.8 Å between any atoms, for ...
<p>A-B) MHC-II-P<sub>7w</sub> complex. C-D) MHC-II-P<sub>7m</sub>. E-F) MHC-II-P<sub>22w</sub> and G...
<p>The ensemble-based pMI profiles of the BR AF complexes with PLX4720 (A), Dabrafenib (B), Vemurafe...
<p>a). Two models (c1.2, left and c1.1, right) for the plexin-C1 TM-JM dimer connected by helical se...
a) and b) Atom-positional RMSD (Å) from the starting structures as observed during the two represent...
<p>A) Variation of the atomic distance d(R/H681, CA - H679’, O) as a characteristic proximal inter-s...
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