Rarefaction based on known taxa. The figure shows the numbers of taxa calculated from samples of sequence data used for constructing the HITdb. Boxplots showing the numbers of found species (A) and genera (B) at two sample sizes (about 90 % and 80 % of sequences, n = 9 and n = 10, respectively). The horizontal red dashed line shows the number of OTUs in all sequences (100 % of sequences). (PDF 52 kb
Length distribution of 16S rRNA gene sequences in the RDP database. The length distribution of 1,345...
Figure S4. Distribution of within-group abundances for all genera when considering only the three mo...
Rarefaction curves 16S rRNA gene sequencing data. Rarefaction curves representing number of species ...
Computational rarefaction. The figure shows the mean number of OTUs calculated from 5000 draws at di...
Assignment of synthetic reads. The figure shows the relative numbers of assigned taxa for synthetic ...
Phylogenetic trees. Package containing Newick and figure files of bacterial and archaeal phylogenies...
Synthetic reads. A table listing the V1-V3 and V4-V6 16S sequences from known human intestinal bacte...
Comparison of memory and time usage. The figure shows memory and time usage in HITdb and Greengenes ...
<p>Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at ...
SRA ID codes of HMP samples. A Table listing the Sequence Read Archive accession codes of the Human ...
Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at hig...
Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at hig...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Figure S3. Number of OTUs and abundance of the genera that were analyze in Fig. 1. The left panel il...
Additional file 3:Table S3. Explicit dataset used in Fig. ure 2. Original 16S rRNA gene amplicon seq...
Length distribution of 16S rRNA gene sequences in the RDP database. The length distribution of 1,345...
Figure S4. Distribution of within-group abundances for all genera when considering only the three mo...
Rarefaction curves 16S rRNA gene sequencing data. Rarefaction curves representing number of species ...
Computational rarefaction. The figure shows the mean number of OTUs calculated from 5000 draws at di...
Assignment of synthetic reads. The figure shows the relative numbers of assigned taxa for synthetic ...
Phylogenetic trees. Package containing Newick and figure files of bacterial and archaeal phylogenies...
Synthetic reads. A table listing the V1-V3 and V4-V6 16S sequences from known human intestinal bacte...
Comparison of memory and time usage. The figure shows memory and time usage in HITdb and Greengenes ...
<p>Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at ...
SRA ID codes of HMP samples. A Table listing the Sequence Read Archive accession codes of the Human ...
Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at hig...
Background: Current sequencing technology enables taxonomic profiling of microbial ecosystems at hig...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Figure S3. Number of OTUs and abundance of the genera that were analyze in Fig. 1. The left panel il...
Additional file 3:Table S3. Explicit dataset used in Fig. ure 2. Original 16S rRNA gene amplicon seq...
Length distribution of 16S rRNA gene sequences in the RDP database. The length distribution of 1,345...
Figure S4. Distribution of within-group abundances for all genera when considering only the three mo...
Rarefaction curves 16S rRNA gene sequencing data. Rarefaction curves representing number of species ...