Additional file 4: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Additional file 18: Table S10. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Differentially expressed contigs in the P. ulmi PSR-TK strain with a BLASTx (E-value treshold e-15) ...

Additional file 16: Table S8. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

The number of mapped RNA reads per contig for both P. ulmi strains (HS and PSR-TK). Mapped reads wer...

Additional file 11: Table S6. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Annotation details and accession numbers of ATP-binding cassette family transporters. (XLSX 441 kb

Additional file 6: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

GSA results for the DEGs detected with an adjusted p < 0.01 in response to the feeding of London mi...

Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

DEGs detected with absolute FC > 2 and adjusted p < 0.01 in response to feeding of grapevine-adapte...

Additional file 7: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

List of DEGs and their FC values associated with the hormone and phenylpropanoid metabolism and defe...

RESEARCH ARTICLE Open Access Comparative genome-wide transcriptome

Jose Díaz-riquelme
Vladimir Zhurov
Cristina Rioja
Ignacio Pérez-moreno
Rafael Torres-pérez
Jérôme Grimplet
Pablo Carbonell-bejerano
Sabina Bajda
Thomas Van Leeuwen
José Miguel Martínez-zapater
Miodrag Grbic
Vojislava Grbic

August 2016

analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, ...

Comparative genome-wide transcriptome analysis of vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, tetranyhus urticae

Díaz-Riquelme, José
Rioja, Cristina
Torres-Pérez, Rafael
Grimplet, Jérôme
Carbonell-Bejerano, Pablo
Martínez-Zapater, José M.
Grbić, Miodrag
Grbić, Vojislava

March 2017

Díaz-Riquelme, José et al.[Background] The two-spotted spider mite, Tetranychus urticae, is an extre...

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Díaz-Riquelme, J.
Zhurov, V.
Rioja, C.
Pérez-Moreno, I.
Torres-Pérez, R.
Grimplet, J.
Carbonell-Bejerano, P.
Bajda, S.
Van Leeuwen, T.
Martínez-Zapater, J.M.
Grbic, M.
Grbic, V.

January 2016

Background: The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. E...

Additional file 6 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 6: Supplementary Table 3. The statistical of mapping reference genome

Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae

Huo, S-M
Yan, Z-C
Zhang, F
Chen, L
Sun, J-T
Hoffmann, AA
Hong, X-Y

July 2021

BACKGROUND: The two-spotted spider mite, Tetranychus urticae, is a major agricultural pest with a co...

Additional file 3 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 3: Supplementary Figure 3. The correlation analysis of top250 DEGs and DAMs

Additional file 10 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 10: Supplementary Table 7. The correlation matrix of 23 DAMs and 118 DEGs

Additional file 9 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 9: Supplementary Table 6. The correlation analysis list of DEGs and DAMs

Additional file 17: Table S9. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Differentially expressed contigs in the P. ulmi PSR-TK strain relative to the HS strain (Benjamini-H...

Additional file 18: Table S10. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Differentially expressed contigs in the P. ulmi PSR-TK strain with a BLASTx (E-value treshold e-15) ...

Additional file 16: Table S8. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

The number of mapped RNA reads per contig for both P. ulmi strains (HS and PSR-TK). Mapped reads wer...

Additional file 11: Table S6. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Annotation details and accession numbers of ATP-binding cassette family transporters. (XLSX 441 kb

Additional file 6: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

GSA results for the DEGs detected with an adjusted p < 0.01 in response to the feeding of London mi...

Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

DEGs detected with absolute FC > 2 and adjusted p < 0.01 in response to feeding of grapevine-adapte...

Additional file 7: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

List of DEGs and their FC values associated with the hormone and phenylpropanoid metabolism and defe...

RESEARCH ARTICLE Open Access Comparative genome-wide transcriptome

Jose Díaz-riquelme
Vladimir Zhurov
Cristina Rioja
Ignacio Pérez-moreno
Rafael Torres-pérez
Jérôme Grimplet
Pablo Carbonell-bejerano
Sabina Bajda
Thomas Van Leeuwen
José Miguel Martínez-zapater
Miodrag Grbic
Vojislava Grbic

August 2016

analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, ...

Comparative genome-wide transcriptome analysis of vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, tetranyhus urticae

Díaz-Riquelme, José
Rioja, Cristina
Torres-Pérez, Rafael
Grimplet, Jérôme
Carbonell-Bejerano, Pablo
Martínez-Zapater, José M.
Grbić, Miodrag
Grbić, Vojislava

March 2017

Díaz-Riquelme, José et al.[Background] The two-spotted spider mite, Tetranychus urticae, is an extre...

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Díaz-Riquelme, J.
Zhurov, V.
Rioja, C.
Pérez-Moreno, I.
Torres-Pérez, R.
Grimplet, J.
Carbonell-Bejerano, P.
Bajda, S.
Van Leeuwen, T.
Martínez-Zapater, J.M.
Grbic, M.
Grbic, V.

January 2016

Background: The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. E...

Additional file 6 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 6: Supplementary Table 3. The statistical of mapping reference genome

Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae

Huo, S-M
Yan, Z-C
Zhang, F
Chen, L
Sun, J-T
Hoffmann, AA
Hong, X-Y

July 2021

BACKGROUND: The two-spotted spider mite, Tetranychus urticae, is a major agricultural pest with a co...

Additional file 3 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 3: Supplementary Figure 3. The correlation analysis of top250 DEGs and DAMs

Additional file 10 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 10: Supplementary Table 7. The correlation matrix of 23 DAMs and 118 DEGs

Additional file 9 of Transcriptomic and metabolomic analyses reveals keys genes and metabolic pathways in tea (Camellia sinensis) against six-spotted spider mite (Eotetranychus Sexmaculatus)

Xiaoping Wang (110673)
Yunjia Xiang (17612778)
Minshan Sun (6002147)
Yuanyuan Xiong (5505200)
Chunhua Li (18618)
Ting Zhang (102583)
Weiwei Ma (665256)
Yun Wang (32846)
Xiao Liu (65413)

December 2023

Additional file 9: Supplementary Table 6. The correlation analysis list of DEGs and DAMs

Additional file 17: Table S9. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Differentially expressed contigs in the P. ulmi PSR-TK strain relative to the HS strain (Benjamini-H...

Additional file 18: Table S10. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Differentially expressed contigs in the P. ulmi PSR-TK strain with a BLASTx (E-value treshold e-15) ...

Additional file 16: Table S8. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

The number of mapped RNA reads per contig for both P. ulmi strains (HS and PSR-TK). Mapped reads wer...

Additional file 11: Table S6. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Annotation details and accession numbers of ATP-binding cassette family transporters. (XLSX 441 kb

Additional file 4: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Abstract

Extracted data

Additional file 4: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Abstract

Extracted data

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